miRNA display CGI


Results 1 - 20 of 1253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6489 5' -64.1 NC_001847.1 + 135006 0.67 0.516111
Target:  5'- -cCGGCCGgGGCC-CGAggcCCGCgGGCGg -3'
miRNA:   3'- ccGCUGGCgCUGGcGCU---GGCGgCCGU- -5'
6489 5' -64.1 NC_001847.1 + 134860 0.66 0.534658
Target:  5'- cGGCGcCCGCGcgggcuCgGCGGCCcCCGGg- -3'
miRNA:   3'- -CCGCuGGCGCu-----GgCGCUGGcGGCCgu -5'
6489 5' -64.1 NC_001847.1 + 134688 0.67 0.470968
Target:  5'- cGCcGCCGCcGCCGCcGCCGCCGcuGCu -3'
miRNA:   3'- cCGcUGGCGcUGGCGcUGGCGGC--CGu -5'
6489 5' -64.1 NC_001847.1 + 134659 0.7 0.356656
Target:  5'- cGCGGCCGCc-CCGCcGCCGCCGcuGCu -3'
miRNA:   3'- cCGCUGGCGcuGGCGcUGGCGGC--CGu -5'
6489 5' -64.1 NC_001847.1 + 134529 0.67 0.468322
Target:  5'- aGGCGcggGCCGCGcGCCgcugcggaGCGGCCGCggagggccaggaccCGGCGc -3'
miRNA:   3'- -CCGC---UGGCGC-UGG--------CGCUGGCG--------------GCCGU- -5'
6489 5' -64.1 NC_001847.1 + 134362 0.69 0.395204
Target:  5'- cGGaCGACgaCGaGGCCgGCG-CCGCCGGCGg -3'
miRNA:   3'- -CC-GCUG--GCgCUGG-CGCuGGCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 134246 0.85 0.032361
Target:  5'- cGGCGGCCgGCGGCCGCGGCgGCCccGGCGc -3'
miRNA:   3'- -CCGCUGG-CGCUGGCGCUGgCGG--CCGU- -5'
6489 5' -64.1 NC_001847.1 + 134170 0.69 0.387282
Target:  5'- nGGCGGaagccCCGcCGGCC-CGGgUGCCGGCGc -3'
miRNA:   3'- -CCGCU-----GGC-GCUGGcGCUgGCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 134138 0.75 0.157699
Target:  5'- cGGCGGCCugGUGGagCGCGugccGCCGCCGGCGg -3'
miRNA:   3'- -CCGCUGG--CGCUg-GCGC----UGGCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 134047 0.79 0.083134
Target:  5'- cGGCGccgcCCGCGGCCGCGGCgC-CCGGCGu -3'
miRNA:   3'- -CCGCu---GGCGCUGGCGCUG-GcGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 133977 0.68 0.419589
Target:  5'- aGGCG-CCGgGGCUGgGAgCGCgcgCGGCAu -3'
miRNA:   3'- -CCGCuGGCgCUGGCgCUgGCG---GCCGU- -5'
6489 5' -64.1 NC_001847.1 + 133975 0.75 0.157699
Target:  5'- cGGUGGCCuucugcGCGGCCGCG-CUGCCGGa- -3'
miRNA:   3'- -CCGCUGG------CGCUGGCGCuGGCGGCCgu -5'
6489 5' -64.1 NC_001847.1 + 133895 0.68 0.42708
Target:  5'- cGGCGcgccGCUGCGGCCGguguaccUGGCCuGCgGGCGg -3'
miRNA:   3'- -CCGC----UGGCGCUGGC-------GCUGG-CGgCCGU- -5'
6489 5' -64.1 NC_001847.1 + 133858 0.72 0.240527
Target:  5'- aGGCGGCCaGCcACCGCGccgccaACCGCUGGgGg -3'
miRNA:   3'- -CCGCUGG-CGcUGGCGC------UGGCGGCCgU- -5'
6489 5' -64.1 NC_001847.1 + 133730 0.69 0.387282
Target:  5'- cGCcACCGCGGugcCCGUG-CCGCCGcGCGa -3'
miRNA:   3'- cCGcUGGCGCU---GGCGCuGGCGGC-CGU- -5'
6489 5' -64.1 NC_001847.1 + 133729 0.69 0.395204
Target:  5'- uGGCGGgCGCGggGCCGCGuGCCuGCCuguguugucggGGCAa -3'
miRNA:   3'- -CCGCUgGCGC--UGGCGC-UGG-CGG-----------CCGU- -5'
6489 5' -64.1 NC_001847.1 + 133664 0.7 0.313993
Target:  5'- aGGCG-CCGCcGCUGCGgcucuGCCGCggCGGCAa -3'
miRNA:   3'- -CCGCuGGCGcUGGCGC-----UGGCG--GCCGU- -5'
6489 5' -64.1 NC_001847.1 + 133540 0.69 0.364151
Target:  5'- cGGCGcagugcGCCGCGcgcugGCCcgaGCGGCgCGCUGGCGc -3'
miRNA:   3'- -CCGC------UGGCGC-----UGG---CGCUG-GCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 133476 0.67 0.506934
Target:  5'- -cUGGCCGCGcgacgGCC-CGGCCGUCgGGCAg -3'
miRNA:   3'- ccGCUGGCGC-----UGGcGCUGGCGG-CCGU- -5'
6489 5' -64.1 NC_001847.1 + 133420 0.7 0.341994
Target:  5'- cGGCuGGCCGCGG-CGCGGCgG-CGGCu -3'
miRNA:   3'- -CCG-CUGGCGCUgGCGCUGgCgGCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.