miRNA display CGI


Results 1 - 20 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 23877 0.65 0.913534
Target:  5'- aGUGcuUUCGCAGcGCgCGCaucaGCGGCa -3'
miRNA:   3'- aUAUuuAGGCGUCuCGgGCGg---CGUCG- -5'
6491 3' -55 NC_001847.1 + 10067 0.65 0.913534
Target:  5'- ------gCCGCGcGGGCCCagcgccccGCCGCGcGCg -3'
miRNA:   3'- auauuuaGGCGU-CUCGGG--------CGGCGU-CG- -5'
6491 3' -55 NC_001847.1 + 63545 0.65 0.913534
Target:  5'- -cUGGcgCCGCcuGGGCCggCGCCggGCGGCa -3'
miRNA:   3'- auAUUuaGGCGu-CUCGG--GCGG--CGUCG- -5'
6491 3' -55 NC_001847.1 + 71899 0.65 0.913534
Target:  5'- gAUGGcgCUGCAGcggcGGaCCCGgCgCGCGGCg -3'
miRNA:   3'- aUAUUuaGGCGUC----UC-GGGC-G-GCGUCG- -5'
6491 3' -55 NC_001847.1 + 58064 0.65 0.913534
Target:  5'- ------gCCGCcGAuuggcgcgcgcGCgCGCCGCAGCg -3'
miRNA:   3'- auauuuaGGCGuCU-----------CGgGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 30020 0.65 0.913534
Target:  5'- ------cCCGCgugcuGGGGCCCauGCCGCccGGCg -3'
miRNA:   3'- auauuuaGGCG-----UCUCGGG--CGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 51955 0.65 0.913534
Target:  5'- ------gCCGCGcGAcCCCGCgGCAGUg -3'
miRNA:   3'- auauuuaGGCGU-CUcGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 99099 0.65 0.913534
Target:  5'- ----uGUCUGC-GAGCaauaaguUGCCGCGGCa -3'
miRNA:   3'- auauuUAGGCGuCUCGg------GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 105906 0.65 0.913534
Target:  5'- ------gCCGCGGGGCCaUGCaGUGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGG-GCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 32441 0.65 0.913534
Target:  5'- gGUGg--CC-CAG-GCgCUGCCGCAGCa -3'
miRNA:   3'- aUAUuuaGGcGUCuCG-GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 14358 0.65 0.913534
Target:  5'- ------cCUGCGGGGaaCGCCGcCAGCg -3'
miRNA:   3'- auauuuaGGCGUCUCggGCGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 121192 0.65 0.913534
Target:  5'- ------cUCGCcacGGGCCgcaGCCGCAGCu -3'
miRNA:   3'- auauuuaGGCGu--CUCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 11235 0.65 0.913534
Target:  5'- gGUGGAggagCCGCcguuuucgGGaAGCuuGCCGCGGg -3'
miRNA:   3'- aUAUUUa---GGCG--------UC-UCGggCGGCGUCg -5'
6491 3' -55 NC_001847.1 + 76408 0.65 0.913534
Target:  5'- --gGGggCCGCggcgGGGGCaCC-CCGCGGCg -3'
miRNA:   3'- auaUUuaGGCG----UCUCG-GGcGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 132833 0.65 0.913534
Target:  5'- ------cCCGCgugcuGGGGCCCauGCCGCccGGCg -3'
miRNA:   3'- auauuuaGGCG-----UCUCGGG--CGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 67567 0.65 0.913534
Target:  5'- --cAGAUCgGCGcGGGCCaaaGCCuCGGCg -3'
miRNA:   3'- auaUUUAGgCGU-CUCGGg--CGGcGUCG- -5'
6491 3' -55 NC_001847.1 + 44400 0.65 0.913534
Target:  5'- -----cUCC-CGGGGCCCggccacgcGCCGCgAGCg -3'
miRNA:   3'- auauuuAGGcGUCUCGGG--------CGGCG-UCG- -5'
6491 3' -55 NC_001847.1 + 39770 0.65 0.913534
Target:  5'- --cAGAgCCgGCGGcgcGGUCCGCCGcCAGCc -3'
miRNA:   3'- auaUUUaGG-CGUC---UCGGGCGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 55440 0.65 0.913534
Target:  5'- ---cGGUCCuGCAGcGCCUGgCGcCGGCg -3'
miRNA:   3'- auauUUAGG-CGUCuCGGGCgGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 42004 0.65 0.913534
Target:  5'- ------cCCGCGGGGggCGCCgGCAGCc -3'
miRNA:   3'- auauuuaGGCGUCUCggGCGG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.