miRNA display CGI


Results 21 - 40 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 131288 0.68 0.796841
Target:  5'- ------gCCGCuggAGGGCCCGCUGCugacGCc -3'
miRNA:   3'- auauuuaGGCG---UCUCGGGCGGCGu---CG- -5'
6491 3' -55 NC_001847.1 + 131248 0.67 0.841005
Target:  5'- ------cCCGCGcuGGCUaCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGUc-UCGG-GCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 131202 0.72 0.614136
Target:  5'- cUGUGGGUCgCGCucgccGCCCGCUGcCAGCg -3'
miRNA:   3'- -AUAUUUAG-GCGucu--CGGGCGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 131192 0.72 0.603632
Target:  5'- ------gCCGcCGGAGacggcgcccccCCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGC-GUCUC-----------GGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 130976 0.67 0.872781
Target:  5'- --cGGGUCCGaggacagcGGGCCCGaggaCUGCAGCg -3'
miRNA:   3'- auaUUUAGGCgu------CUCGGGC----GGCGUCG- -5'
6491 3' -55 NC_001847.1 + 130790 0.69 0.768384
Target:  5'- gGUGGAggcggCCGCggccggggcGGAGgCgGCCGCGGCc -3'
miRNA:   3'- aUAUUUa----GGCG---------UCUCgGgCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 130741 0.68 0.832541
Target:  5'- --cGGAggaCGCGGAcagcGCCUggGCCGCGGCg -3'
miRNA:   3'- auaUUUag-GCGUCU----CGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 130701 0.69 0.758628
Target:  5'- --gGAcgUCGCGGAGUgCGCCGaGGCc -3'
miRNA:   3'- auaUUuaGGCGUCUCGgGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 130611 0.69 0.768384
Target:  5'- ------cCCGCGGGcGgCCGCCGCgaGGCa -3'
miRNA:   3'- auauuuaGGCGUCU-CgGGCGGCG--UCG- -5'
6491 3' -55 NC_001847.1 + 130437 0.67 0.849268
Target:  5'- --cGAGUCCGCGGAccucgGCCCGaCGgGGg -3'
miRNA:   3'- auaUUUAGGCGUCU-----CGGGCgGCgUCg -5'
6491 3' -55 NC_001847.1 + 130248 0.68 0.796841
Target:  5'- gGUGucGUUCGCAGcggcgcgggGGCCCuGCCGCuGCc -3'
miRNA:   3'- aUAUu-UAGGCGUC---------UCGGG-CGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 130162 0.67 0.841005
Target:  5'- ------gCCGCGG---CCGCCGCAGCc -3'
miRNA:   3'- auauuuaGGCGUCucgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 129931 0.66 0.887328
Target:  5'- ------cCCGCc--GgCCGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCgGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 129907 0.68 0.7875
Target:  5'- ------cCCGCGGAGaCCUGCacggagccaugCGCAGCu -3'
miRNA:   3'- auauuuaGGCGUCUC-GGGCG-----------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 128783 0.67 0.841005
Target:  5'- ------gCCGCAGcGGCUaCGCCcGCGGCg -3'
miRNA:   3'- auauuuaGGCGUC-UCGG-GCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 128162 0.65 0.913534
Target:  5'- ----uAUCUGCuGggcGGCCCGCCG-GGCg -3'
miRNA:   3'- auauuUAGGCGuC---UCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 128013 0.66 0.886623
Target:  5'- ---uGAUgCUGCucacgggccaggaGGAGCCCgGCCGUGGCg -3'
miRNA:   3'- auauUUA-GGCG-------------UCUCGGG-CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 127903 0.66 0.887328
Target:  5'- ------cCCGCAcAGCcacccgaccagCCGCUGCAGCg -3'
miRNA:   3'- auauuuaGGCGUcUCG-----------GGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 127837 0.7 0.697961
Target:  5'- cGUcgGUCCGCucAGGcGCCgCGCCaGCGGCu -3'
miRNA:   3'- aUAuuUAGGCG--UCU-CGG-GCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 127705 0.67 0.872781
Target:  5'- aGUAGGUCCGCgcuAGcgacugcgccuuGGCaagCCGCCGguGCc -3'
miRNA:   3'- aUAUUUAGGCG---UC------------UCG---GGCGGCguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.