miRNA display CGI


Results 21 - 40 of 627 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6491 3' -55 NC_001847.1 + 90619 0.66 0.900922
Target:  5'- ------aCCGC-GAGCUCGCgGaCGGCg -3'
miRNA:   3'- auauuuaGGCGuCUCGGGCGgC-GUCG- -5'
6491 3' -55 NC_001847.1 + 51863 0.66 0.906721
Target:  5'- --gGAggCCGCAGGugugcgccucugcGCCCGCCccGCcGCg -3'
miRNA:   3'- auaUUuaGGCGUCU-------------CGGGCGG--CGuCG- -5'
6491 3' -55 NC_001847.1 + 55311 0.66 0.907352
Target:  5'- --aGAcgCCGCGGucGCCCacuuCCgGCAGCg -3'
miRNA:   3'- auaUUuaGGCGUCu-CGGGc---GG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 42004 0.65 0.913534
Target:  5'- ------cCCGCGGGGggCGCCgGCAGCc -3'
miRNA:   3'- auauuuaGGCGUCUCggGCGG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 30922 0.66 0.896946
Target:  5'- ------aCCGCGGuGCCCGugccccgcgcgaguaCCgGCAGCg -3'
miRNA:   3'- auauuuaGGCGUCuCGGGC---------------GG-CGUCG- -5'
6491 3' -55 NC_001847.1 + 21945 0.66 0.900922
Target:  5'- ------aCCGC--GGCUCGCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 3206 0.66 0.907352
Target:  5'- ---cGGUCCGCc-AGCUCGC-GCAGCc -3'
miRNA:   3'- auauUUAGGCGucUCGGGCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 105906 0.65 0.913534
Target:  5'- ------gCCGCGGGGCCaUGCaGUGGCg -3'
miRNA:   3'- auauuuaGGCGUCUCGG-GCGgCGUCG- -5'
6491 3' -55 NC_001847.1 + 44072 0.66 0.900922
Target:  5'- cGUGcagCUGUcGuGCCUGCUGCGGCg -3'
miRNA:   3'- aUAUuuaGGCGuCuCGGGCGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 121192 0.65 0.913534
Target:  5'- ------cUCGCcacGGGCCgcaGCCGCAGCu -3'
miRNA:   3'- auauuuaGGCGu--CUCGGg--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 72661 0.66 0.906721
Target:  5'- ------cCCGCGGccGCCCGCCGgcgacccCGGCc -3'
miRNA:   3'- auauuuaGGCGUCu-CGGGCGGC-------GUCG- -5'
6491 3' -55 NC_001847.1 + 55452 0.66 0.900922
Target:  5'- ----cAUCCGCAaagccaccGAGCCCGUauucgaggagauCGUGGCg -3'
miRNA:   3'- auauuUAGGCGU--------CUCGGGCG------------GCGUCG- -5'
6491 3' -55 NC_001847.1 + 51909 0.66 0.907352
Target:  5'- ------gCCGCc--GCCCcgGCCGCGGCg -3'
miRNA:   3'- auauuuaGGCGucuCGGG--CGGCGUCG- -5'
6491 3' -55 NC_001847.1 + 51973 0.66 0.907352
Target:  5'- ----cGUCCGCc-AGCCCGUCG-GGCg -3'
miRNA:   3'- auauuUAGGCGucUCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 128162 0.65 0.913534
Target:  5'- ----uAUCUGCuGggcGGCCCGCCG-GGCg -3'
miRNA:   3'- auauuUAGGCGuC---UCGGGCGGCgUCG- -5'
6491 3' -55 NC_001847.1 + 39770 0.65 0.913534
Target:  5'- --cAGAgCCgGCGGcgcGGUCCGCCGcCAGCc -3'
miRNA:   3'- auaUUUaGG-CGUC---UCGGGCGGC-GUCG- -5'
6491 3' -55 NC_001847.1 + 81300 0.66 0.894246
Target:  5'- --cAGcgCCGCc-AGCgCCGCCGCuGCc -3'
miRNA:   3'- auaUUuaGGCGucUCG-GGCGGCGuCG- -5'
6491 3' -55 NC_001847.1 + 114758 0.66 0.894246
Target:  5'- ------aCCGguGAGCCa-CCGCgAGCg -3'
miRNA:   3'- auauuuaGGCguCUCGGgcGGCG-UCG- -5'
6491 3' -55 NC_001847.1 + 1625 0.66 0.900922
Target:  5'- ------gCCGCGGcAGCaCCGCgGCGcGCa -3'
miRNA:   3'- auauuuaGGCGUC-UCG-GGCGgCGU-CG- -5'
6491 3' -55 NC_001847.1 + 3240 0.66 0.900922
Target:  5'- ------cCCGCGccGuGCUCGCCgGCGGCa -3'
miRNA:   3'- auauuuaGGCGU--CuCGGGCGG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.