miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6492 5' -57.4 NC_001847.1 + 119153 0.66 0.80397
Target:  5'- cGGC---GCCgCGGCCgccgcggGGCGgcGGGGCa -3'
miRNA:   3'- -UCGuauCGGaGCCGG-------UCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 120928 0.66 0.804865
Target:  5'- gGGCGgGGCgggCGcGCgGGCGUGGuGGCu -3'
miRNA:   3'- -UCGUaUCGga-GC-CGgUCGCAUCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 13319 0.66 0.82242
Target:  5'- aGGCAgacgGGCUcCGGCacgGGCGgcgAGcAGGCg -3'
miRNA:   3'- -UCGUa---UCGGaGCCGg--UCGCa--UC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 133111 0.66 0.82242
Target:  5'- -uCGUGGCCaCGGCCGGCGccgugcUGGAaaaccugcGGCu -3'
miRNA:   3'- ucGUAUCGGaGCCGGUCGC------AUCU--------CCG- -5'
6492 5' -57.4 NC_001847.1 + 39758 0.67 0.777363
Target:  5'- cGGCGccGGCCUCaGaGCCGGCGgcGcGGUc -3'
miRNA:   3'- -UCGUa-UCGGAG-C-CGGUCGCauCuCCG- -5'
6492 5' -57.4 NC_001847.1 + 34905 0.66 0.795845
Target:  5'- uGGCGcuuuggGGUCUC-GCCAGCG-AGAGaGCu -3'
miRNA:   3'- -UCGUa-----UCGGAGcCGGUCGCaUCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 10704 0.66 0.812848
Target:  5'- gGGCGcGGCCcgCGccggccaagcgccGCCAGCGaguuuagGGGGGCg -3'
miRNA:   3'- -UCGUaUCGGa-GC-------------CGGUCGCa------UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 876 0.66 0.830937
Target:  5'- cGCGcGGCggCGGCCcGCGccGGGGCc -3'
miRNA:   3'- uCGUaUCGgaGCCGGuCGCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 35827 0.66 0.795845
Target:  5'- uAGCuucGGCCccCGGCgGGCGgcGAugGGCg -3'
miRNA:   3'- -UCGua-UCGGa-GCCGgUCGCauCU--CCG- -5'
6492 5' -57.4 NC_001847.1 + 116112 0.66 0.830937
Target:  5'- gGGCugcuucucGGCCuuUCGGCCGGgCGcuGGGGCg -3'
miRNA:   3'- -UCGua------UCGG--AGCCGGUC-GCauCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 52892 0.66 0.810201
Target:  5'- aGGCgAUGGCCaguccuagguccgCGGgCAGCGgcucGGGGCg -3'
miRNA:   3'- -UCG-UAUCGGa------------GCCgGUCGCau--CUCCG- -5'
6492 5' -57.4 NC_001847.1 + 121772 0.66 0.795845
Target:  5'- cGCGUAGCgCUCauuuGCC-GUGUAGccGGGCg -3'
miRNA:   3'- uCGUAUCG-GAGc---CGGuCGCAUC--UCCG- -5'
6492 5' -57.4 NC_001847.1 + 32669 0.66 0.813726
Target:  5'- uGCcUGGCCugcaUCcGCCGGUGgcuggAGGGGCg -3'
miRNA:   3'- uCGuAUCGG----AGcCGGUCGCa----UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 100388 0.66 0.813726
Target:  5'- cGCGcAGCCgcgccagcUCGGCC-GCGUcGaAGGCg -3'
miRNA:   3'- uCGUaUCGG--------AGCCGGuCGCAuC-UCCG- -5'
6492 5' -57.4 NC_001847.1 + 98285 0.66 0.82242
Target:  5'- cGCGUAGagCUCGGCCGcCGccGAGcGCa -3'
miRNA:   3'- uCGUAUCg-GAGCCGGUcGCauCUC-CG- -5'
6492 5' -57.4 NC_001847.1 + 58191 0.66 0.82242
Target:  5'- aAGCc--GCCuUCGGCCAGCaGgcGcuccGGGCg -3'
miRNA:   3'- -UCGuauCGG-AGCCGGUCG-CauC----UCCG- -5'
6492 5' -57.4 NC_001847.1 + 58269 0.67 0.76792
Target:  5'- aGGCA-GGCCuccaugugcUCGGCC-GCGgcGAcGGCg -3'
miRNA:   3'- -UCGUaUCGG---------AGCCGGuCGCauCU-CCG- -5'
6492 5' -57.4 NC_001847.1 + 42933 0.67 0.777363
Target:  5'- uGC-UGGCCgcccaagCGGCCGacgccgcgcGCGggGGGGGCg -3'
miRNA:   3'- uCGuAUCGGa------GCCGGU---------CGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 79575 0.66 0.786675
Target:  5'- cGCcgGGCUcgCGGCCucuucgggcgggGGCGccGGGGGCg -3'
miRNA:   3'- uCGuaUCGGa-GCCGG------------UCGCa-UCUCCG- -5'
6492 5' -57.4 NC_001847.1 + 63775 0.66 0.794935
Target:  5'- gGGCAUcGCCUgcaUGGCCGGCaucaccuGUGGuGGGUu -3'
miRNA:   3'- -UCGUAuCGGA---GCCGGUCG-------CAUC-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.