Results 1 - 20 of 356 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6493 | 5' | -60.4 | NC_001847.1 | + | 120470 | 0.66 | 0.730587 |
Target: 5'- -cGCcGCgCCGccGGCCGCGCCGucGAu -3' miRNA: 3'- ccCGaUGgGGCu-CCGGCGUGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 125313 | 0.66 | 0.701574 |
Target: 5'- aGGGC-GCCuuGGGcguuuucggaGCCGCGCUGAAc- -3' miRNA: 3'- -CCCGaUGGggCUC----------CGGCGUGGCUUcu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 130186 | 0.66 | 0.691781 |
Target: 5'- cGGGC-GCCCgGccugaagagacGGGCgGCGCgGAGGGc -3' miRNA: 3'- -CCCGaUGGGgC-----------UCCGgCGUGgCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 18078 | 1.1 | 0.00098 |
Target: 5'- gGGGCUACCCCGAGGCCGCACCGAAGAc -3' miRNA: 3'- -CCCGAUGGGGCUCCGGCGUGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 79521 | 0.66 | 0.730587 |
Target: 5'- gGGGCUggcgGCgUCGucGCCGUcgggGCCGggGGg -3' miRNA: 3'- -CCCGA----UGgGGCucCGGCG----UGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 60041 | 0.66 | 0.730587 |
Target: 5'- cGGGCaaGCgCCGGGGCgC-CGCCGAcGAu -3' miRNA: 3'- -CCCGa-UGgGGCUCCG-GcGUGGCUuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 5729 | 0.66 | 0.730587 |
Target: 5'- aGGGCUuaccuGCCCgCGGGGCgGUucGCCGccAAGc -3' miRNA: 3'- -CCCGA-----UGGG-GCUCCGgCG--UGGC--UUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 65820 | 0.66 | 0.720985 |
Target: 5'- -aGCaGCgCCCGAGGcCCGCGCCcaaAAGGc -3' miRNA: 3'- ccCGaUG-GGGCUCC-GGCGUGGc--UUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 13949 | 0.66 | 0.720985 |
Target: 5'- gGGGCcGCCCCGcgcaAGuGCCGCcCCGc--- -3' miRNA: 3'- -CCCGaUGGGGC----UC-CGGCGuGGCuucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 28130 | 0.66 | 0.701574 |
Target: 5'- cGGCgacguugGgCCCGAGGaCUGCAgcgacgccggguCCGAGGAc -3' miRNA: 3'- cCCGa------UgGGGCUCC-GGCGU------------GGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 86619 | 0.66 | 0.71519 |
Target: 5'- uGGCcGCgCCGcguaagcgugugggcGGGCCGCGCCGccccGGAg -3' miRNA: 3'- cCCGaUGgGGC---------------UCCGGCGUGGCu---UCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 28219 | 0.66 | 0.720985 |
Target: 5'- gGGGCgagGCCCgGgaGGGgaGCACCGAc-- -3' miRNA: 3'- -CCCGa--UGGGgC--UCCggCGUGGCUucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 30400 | 0.66 | 0.730587 |
Target: 5'- cGGCgg-CCCGAGuggccGCCGCGCCGcGGc -3' miRNA: 3'- cCCGaugGGGCUC-----CGGCGUGGCuUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 116799 | 0.66 | 0.711312 |
Target: 5'- cGGCUGCCgCCGAcGGUaaCGCGCCu---- -3' miRNA: 3'- cCCGAUGG-GGCU-CCG--GCGUGGcuucu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 106450 | 0.66 | 0.730587 |
Target: 5'- nGGGU--CCCgGuAGGCCaGCGCCGccGAu -3' miRNA: 3'- -CCCGauGGGgC-UCCGG-CGUGGCuuCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 32956 | 0.66 | 0.720985 |
Target: 5'- gGGGCggaggagGCCgggGAGGCCagagGCGCCGggGc -3' miRNA: 3'- -CCCGa------UGGgg-CUCCGG----CGUGGCuuCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 67072 | 0.66 | 0.701574 |
Target: 5'- cGGCguucGCCCCGccgcAGG-CGCGCCGcGAGGc -3' miRNA: 3'- cCCGa---UGGGGC----UCCgGCGUGGC-UUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 105630 | 0.66 | 0.695705 |
Target: 5'- cGGGCgaGCUCUGcGGCCGaagcgccgcccgcgGCCGGAGAg -3' miRNA: 3'- -CCCGa-UGGGGCuCCGGCg-------------UGGCUUCU- -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 96091 | 0.66 | 0.730587 |
Target: 5'- uGGCggaGCCggagUCGGGGCCGgaGCCGGAGu -3' miRNA: 3'- cCCGa--UGG----GGCUCCGGCg-UGGCUUCu -5' |
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6493 | 5' | -60.4 | NC_001847.1 | + | 18561 | 0.66 | 0.730587 |
Target: 5'- gGGGCUcggugaccGgCCCGuGuGCCGCGCCaAAGu -3' miRNA: 3'- -CCCGA--------UgGGGCuC-CGGCGUGGcUUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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