miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6495 3' -60.5 NC_001847.1 + 125792 0.72 0.330786
Target:  5'- -uGGCaAGCGAgucggCGGGCCgGCgGGCGu -3'
miRNA:   3'- agUCG-UCGCUaa---GCCCGGgCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 125575 0.7 0.4273
Target:  5'- gCGGCcGCGGgcggCGGGCUggacggcugcagCGCUGGCGc -3'
miRNA:   3'- aGUCGuCGCUaa--GCCCGG------------GCGACCGC- -5'
6495 3' -60.5 NC_001847.1 + 125503 0.66 0.678167
Target:  5'- cCGGCugcucgAGCGg--CGGGCCgGCgcGGCGg -3'
miRNA:   3'- aGUCG------UCGCuaaGCCCGGgCGa-CCGC- -5'
6495 3' -60.5 NC_001847.1 + 125327 0.69 0.472148
Target:  5'- gCGGCGGCGGgcCGGGCCgGuCUGcCGg -3'
miRNA:   3'- aGUCGUCGCUaaGCCCGGgC-GACcGC- -5'
6495 3' -60.5 NC_001847.1 + 125074 0.69 0.472148
Target:  5'- --cGCGGCGGggcgcUGGGCCCGCgcGGCc -3'
miRNA:   3'- aguCGUCGCUaa---GCCCGGGCGa-CCGc -5'
6495 3' -60.5 NC_001847.1 + 124982 0.67 0.628063
Target:  5'- --cGCAGCGGgcc-GGCCUGCUcgGGCGa -3'
miRNA:   3'- aguCGUCGCUaagcCCGGGCGA--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 124923 0.66 0.668187
Target:  5'- cCGGgGGCGAcagCGGGCgCGCccugGGCc -3'
miRNA:   3'- aGUCgUCGCUaa-GCCCGgGCGa---CCGc -5'
6495 3' -60.5 NC_001847.1 + 124891 0.67 0.628063
Target:  5'- cUCGGCucCGAaaagCGGGCCCgGCaGGCGc -3'
miRNA:   3'- -AGUCGucGCUaa--GCCCGGG-CGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 124645 0.66 0.69801
Target:  5'- gCAGCAGCG---CGGGgCCGUcGGgGa -3'
miRNA:   3'- aGUCGUCGCuaaGCCCgGGCGaCCgC- -5'
6495 3' -60.5 NC_001847.1 + 124538 0.68 0.528902
Target:  5'- cCAGCAGgGcg-CGGGCCgGCgccGGCc -3'
miRNA:   3'- aGUCGUCgCuaaGCCCGGgCGa--CCGc -5'
6495 3' -60.5 NC_001847.1 + 124434 0.67 0.614006
Target:  5'- -uGGCGGCGcuuggccggcgCGGGCCgCGCccgGGCGc -3'
miRNA:   3'- agUCGUCGCuaa--------GCCCGG-GCGa--CCGC- -5'
6495 3' -60.5 NC_001847.1 + 124224 0.67 0.61802
Target:  5'- cCGGCcgAG-GAUUCGGGCCgGCcGaGCGa -3'
miRNA:   3'- aGUCG--UCgCUAAGCCCGGgCGaC-CGC- -5'
6495 3' -60.5 NC_001847.1 + 123808 0.67 0.61802
Target:  5'- gCGGCAGCGg--CaGGCgCCGUccUGGCGu -3'
miRNA:   3'- aGUCGUCGCuaaGcCCG-GGCG--ACCGC- -5'
6495 3' -60.5 NC_001847.1 + 123083 0.73 0.316346
Target:  5'- aCAGCGaCGAUgaCGGGCCCGCUaGCa -3'
miRNA:   3'- aGUCGUcGCUAa-GCCCGGGCGAcCGc -5'
6495 3' -60.5 NC_001847.1 + 122827 0.68 0.538617
Target:  5'- cCGGCgGGCGcgcccacCGGGCCCGCgcccUGGCu -3'
miRNA:   3'- aGUCG-UCGCuaa----GCCCGGGCG----ACCGc -5'
6495 3' -60.5 NC_001847.1 + 121486 0.66 0.658178
Target:  5'- aUCAGCAGCGucgUCGcGGUucgcaCCGCUacguaGGCc -3'
miRNA:   3'- -AGUCGUCGCua-AGC-CCG-----GGCGA-----CCGc -5'
6495 3' -60.5 NC_001847.1 + 121372 0.73 0.295587
Target:  5'- uUCAGCAGCaGGUUCaGGCugcccaucagCCGCUGcGCGa -3'
miRNA:   3'- -AGUCGUCG-CUAAGcCCG----------GGCGAC-CGC- -5'
6495 3' -60.5 NC_001847.1 + 120918 0.67 0.606986
Target:  5'- -aGGCAuacgaggGCGGggCGGGCgCGCgGGCGu -3'
miRNA:   3'- agUCGU-------CGCUaaGCCCGgGCGaCCGC- -5'
6495 3' -60.5 NC_001847.1 + 120837 0.67 0.61802
Target:  5'- -gAGCAGCGGgagCGGGgCCGCgacGCc -3'
miRNA:   3'- agUCGUCGCUaa-GCCCgGGCGac-CGc -5'
6495 3' -60.5 NC_001847.1 + 119945 0.68 0.548392
Target:  5'- cCGGC-GCGGUgCGGGUCCGCUG-Cc -3'
miRNA:   3'- aGUCGuCGCUAaGCCCGGGCGACcGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.