Results 21 - 40 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6495 | 3' | -60.5 | NC_001847.1 | + | 107040 | 0.66 | 0.658178 |
Target: 5'- aUCGGCGGUGucgcgCGcGGCCCcggGCaGGCGc -3' miRNA: 3'- -AGUCGUCGCuaa--GC-CCGGG---CGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 65737 | 0.66 | 0.668187 |
Target: 5'- gCAGgaaCAGCGc--CGGGCCCGCaaaGGCc -3' miRNA: 3'- aGUC---GUCGCuaaGCCCGGGCGa--CCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 96823 | 0.66 | 0.678167 |
Target: 5'- gCGGCGGCGAccgcgCGGGC--GUUGGCu -3' miRNA: 3'- aGUCGUCGCUaa---GCCCGggCGACCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 20070 | 0.66 | 0.69801 |
Target: 5'- -gAGCGGCGuggCGGcuCCCGC-GGCGc -3' miRNA: 3'- agUCGUCGCuaaGCCc-GGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 85319 | 0.67 | 0.638109 |
Target: 5'- -aAGCuGC---UCGccgauGGCCCGCUGGCGc -3' miRNA: 3'- agUCGuCGcuaAGC-----CCGGGCGACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 111339 | 0.66 | 0.64815 |
Target: 5'- -gAGCAGUGG-UCGGuggccGCCgCGCUgGGCGa -3' miRNA: 3'- agUCGUCGCUaAGCC-----CGG-GCGA-CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 22110 | 0.66 | 0.668187 |
Target: 5'- cCGGgGGCGAcagCGGGCgCGCccugGGCc -3' miRNA: 3'- aGUCgUCGCUaa-GCCCGgGCGa---CCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 111074 | 0.66 | 0.69801 |
Target: 5'- gCuGCcGCGGgccUGGGCCCGgCUGcGCGa -3' miRNA: 3'- aGuCGuCGCUaa-GCCCGGGC-GAC-CGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 90843 | 0.66 | 0.658178 |
Target: 5'- aUCAGCgAGCGGcgcccCGGGgCCgggGCUGGUGu -3' miRNA: 3'- -AGUCG-UCGCUaa---GCCCgGG---CGACCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 96429 | 0.66 | 0.69801 |
Target: 5'- cCGGCGGCaGGcgCGGcCCCGgaGGCa -3' miRNA: 3'- aGUCGUCG-CUaaGCCcGGGCgaCCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 14527 | 0.66 | 0.668187 |
Target: 5'- cUCGGCGGCGc-UCGcuGCCCGC-GGUGc -3' miRNA: 3'- -AGUCGUCGCuaAGCc-CGGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 57649 | 0.66 | 0.658178 |
Target: 5'- cCGGCcacCGAcUCGGGCCgGCgGGCc -3' miRNA: 3'- aGUCGuc-GCUaAGCCCGGgCGaCCGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 81855 | 0.66 | 0.678167 |
Target: 5'- gUCAGCGGCGugaggCGGacGCgCGCcugGGCGc -3' miRNA: 3'- -AGUCGUCGCuaa--GCC--CGgGCGa--CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 62551 | 0.66 | 0.678167 |
Target: 5'- cCAGCAGCGcguUUUGGcccaGCCCGCgcaucGCGu -3' miRNA: 3'- aGUCGUCGCu--AAGCC----CGGGCGac---CGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 26391 | 0.66 | 0.688111 |
Target: 5'- -aAGCAGCGgg-CGGGCCCGUcguccGCc -3' miRNA: 3'- agUCGUCGCuaaGCCCGGGCGac---CGc -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 124645 | 0.66 | 0.69801 |
Target: 5'- gCAGCAGCG---CGGGgCCGUcGGgGa -3' miRNA: 3'- aGUCGUCGCuaaGCCCgGGCGaCCgC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 22169 | 0.67 | 0.628063 |
Target: 5'- --cGCAGCGGgcc-GGCCUGCUcgGGCGa -3' miRNA: 3'- aguCGUCGCUaagcCCGGGCGA--CCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 71708 | 0.67 | 0.638109 |
Target: 5'- gUCuGC-GCGGUgcgCcGGCCCGCcGGCGc -3' miRNA: 3'- -AGuCGuCGCUAa--GcCCGGGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 25982 | 0.66 | 0.64815 |
Target: 5'- gUCAGaccagGGCGGgcgggCGGGCgCGCaGGCGc -3' miRNA: 3'- -AGUCg----UCGCUaa---GCCCGgGCGaCCGC- -5' |
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6495 | 3' | -60.5 | NC_001847.1 | + | 8463 | 0.66 | 0.64815 |
Target: 5'- -aGGCGGCGc--CGGGCCgGg-GGCGg -3' miRNA: 3'- agUCGUCGCuaaGCCCGGgCgaCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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