miRNA display CGI


Results 21 - 40 of 695 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6499 5' -57.1 NC_001847.1 + 132601 0.69 0.637657
Target:  5'- -cAGCcCGCCgGAGAGCAgcggucccgcggccCGGCAGCAa -3'
miRNA:   3'- auUUGcGCGG-CUCUCGU--------------GCCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 132264 0.66 0.799744
Target:  5'- -cGACGCGC----GGCGCGGCGGCc- -3'
miRNA:   3'- auUUGCGCGgcucUCGUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 132189 0.69 0.661505
Target:  5'- --uGCGCGCCGAGGcggccgccGCGCuggaGGCGGCc- -3'
miRNA:   3'- auuUGCGCGGCUCU--------CGUG----CCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 132151 0.68 0.682142
Target:  5'- gGAGCGCGCgCGgcuccAGcGCGCGGCcccGGCGGc -3'
miRNA:   3'- aUUUGCGCG-GC-----UCuCGUGCCG---UCGUC- -5'
6499 5' -57.1 NC_001847.1 + 132071 0.73 0.432203
Target:  5'- --uGCGCGCCG-GAcGCGCuGGCGGCGc -3'
miRNA:   3'- auuUGCGCGGCuCU-CGUG-CCGUCGUc -5'
6499 5' -57.1 NC_001847.1 + 131904 0.73 0.441328
Target:  5'- --uGC-CGCCGGcGAGCACGGC-GCGGg -3'
miRNA:   3'- auuUGcGCGGCU-CUCGUGCCGuCGUC- -5'
6499 5' -57.1 NC_001847.1 + 131782 0.67 0.75254
Target:  5'- -cGGCGCGCgGAuuGCgGCGGcCGGCAGc -3'
miRNA:   3'- auUUGCGCGgCUcuCG-UGCC-GUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 131695 0.72 0.450562
Target:  5'- aGAACGCGCUGuGGGCGCugccgcacguGGCGGCc- -3'
miRNA:   3'- aUUUGCGCGGCuCUCGUG----------CCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 130710 0.67 0.732827
Target:  5'- gGAGUGCGCCGAG-GCcgaGGgGGCGGa -3'
miRNA:   3'- aUUUGCGCGGCUCuCGug-CCgUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 130599 0.66 0.817599
Target:  5'- -cGACgGCGCCG-GAGaCGCGGgGGCc- -3'
miRNA:   3'- auUUG-CGCGGCuCUC-GUGCCgUCGuc -5'
6499 5' -57.1 NC_001847.1 + 130207 0.72 0.450562
Target:  5'- cGGGCgGCGCgGAGGGCGCGggaagcGCGGCGGc -3'
miRNA:   3'- aUUUG-CGCGgCUCUCGUGC------CGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 130135 0.66 0.83476
Target:  5'- ---uCGCGCgCGAGGGCGaGGC-GCAa -3'
miRNA:   3'- auuuGCGCG-GCUCUCGUgCCGuCGUc -5'
6499 5' -57.1 NC_001847.1 + 129701 0.68 0.722832
Target:  5'- gGGACGCGCuuguggagCGAGAcGCGCGGCuaaccGCGc -3'
miRNA:   3'- aUUUGCGCG--------GCUCU-CGUGCCGu----CGUc -5'
6499 5' -57.1 NC_001847.1 + 129650 0.66 0.82627
Target:  5'- aAGugGCgGUCGAGGuuGCGGCGGCc- -3'
miRNA:   3'- aUUugCG-CGGCUCUcgUGCCGUCGuc -5'
6499 5' -57.1 NC_001847.1 + 129072 0.66 0.790578
Target:  5'- cGAGCGCGCCGuuGAcgcuuuuuuucgGCACGuGCGcgcGCAGu -3'
miRNA:   3'- aUUUGCGCGGCu-CU------------CGUGC-CGU---CGUC- -5'
6499 5' -57.1 NC_001847.1 + 128884 0.67 0.75254
Target:  5'- aAGGCGCGCuCGAaGGCAaugcUGGgGGCGGa -3'
miRNA:   3'- aUUUGCGCG-GCUcUCGU----GCCgUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 128158 0.67 0.780327
Target:  5'- cAAACuacccaCGCCGgcaagcugauggcAGGGgGCGGCGGCAGg -3'
miRNA:   3'- aUUUGc-----GCGGC-------------UCUCgUGCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 127919 0.67 0.742733
Target:  5'- cAAGCgaGCGCagagagaaGAGAGCG-GGCGGCGGc -3'
miRNA:   3'- aUUUG--CGCGg-------CUCUCGUgCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 127756 0.7 0.579685
Target:  5'- cGAGCGCGCCacguccuccacugucAGcGGCGcCGGCAGCAGc -3'
miRNA:   3'- aUUUGCGCGGc--------------UC-UCGU-GCCGUCGUC- -5'
6499 5' -57.1 NC_001847.1 + 127332 0.68 0.712756
Target:  5'- ----gGCGCCGAGgcGGC-CGGCugccgcGGCAGg -3'
miRNA:   3'- auuugCGCGGCUC--UCGuGCCG------UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.