miRNA display CGI


Results 1 - 20 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 85205 0.66 0.983193
Target:  5'- aCCGCGCGccacGGcguCCAAcguGCGCACGCGc -3'
miRNA:   3'- -GGCGCGU----CUuu-GGUUc--UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 126888 0.66 0.982599
Target:  5'- gUCaCGCAGGAACCGcucguugcugccgcAGGCcaGCGCGUGGc -3'
miRNA:   3'- -GGcGCGUCUUUGGU--------------UCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3910 0.66 0.981988
Target:  5'- gCCaGCGCGGgcGCCGGuugcgcgcccgcgcuGGCGC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCuuUGGUU---------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 13801 1.12 0.004253
Target:  5'- gCCGCGCAGAAACCAAGACACACGCGAg -3'
miRNA:   3'- -GGCGCGUCUUUGGUUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 68743 0.66 0.983193
Target:  5'- cCCGCGCcgcGGAugU---GCGCGCGUGAu -3'
miRNA:   3'- -GGCGCGu--CUUugGuucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 44382 0.66 0.983193
Target:  5'- gCCGCGCAGGcguuCCGcGACGCG-GUGu -3'
miRNA:   3'- -GGCGCGUCUuu--GGUuCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 14004 0.66 0.983193
Target:  5'- aCGCGCcGAGAgCAcGGCAgCAgGCGGc -3'
miRNA:   3'- gGCGCGuCUUUgGUuCUGU-GUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 123691 0.66 0.983193
Target:  5'- aCGCGCAcGGuAGCC---GCugGCGCGGg -3'
miRNA:   3'- gGCGCGU-CU-UUGGuucUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 40949 0.66 0.983193
Target:  5'- gCGCGCAGc-GCCucGAacugccCGCGCGAg -3'
miRNA:   3'- gGCGCGUCuuUGGuuCUgu----GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 48431 0.66 0.982599
Target:  5'- gCCGCGUGGAGuugagcaccagcACCGagggcgugaaggugAGGCaaaaGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU------------UGGU--------------UCUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 90202 0.66 0.982997
Target:  5'- cCCGaGCAGu--CCAGGucucgguaaaacaGCACGCGCGc -3'
miRNA:   3'- -GGCgCGUCuuuGGUUC-------------UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 49807 0.66 0.983193
Target:  5'- gUGCGCuGcuGCUggGcGCGCugGCGGc -3'
miRNA:   3'- gGCGCGuCuuUGGuuC-UGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 875 0.66 0.983193
Target:  5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3'
miRNA:   3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 46945 0.66 0.982997
Target:  5'- gCCGCGUgcggcgaagccaAGGAGCCGgccccacuuugggAGGCGCAgGCu- -3'
miRNA:   3'- -GGCGCG------------UCUUUGGU-------------UCUGUGUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 118760 0.66 0.983193
Target:  5'- aCGCGCGGuu-----GugGCGCGCGGu -3'
miRNA:   3'- gGCGCGUCuuugguuCugUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 65814 0.66 0.983193
Target:  5'- gCCGCcaGCAGcgcCCGAGGCcCGCGCc- -3'
miRNA:   3'- -GGCG--CGUCuuuGGUUCUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 29623 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 124020 0.66 0.981988
Target:  5'- gCCGCGUccaAGAAGCCGuccuccagcgccacGACGC-CGUGGu -3'
miRNA:   3'- -GGCGCG---UCUUUGGUu-------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 105225 0.66 0.983193
Target:  5'- aCC-CGCGGgcGCgcGGGCACAgGCGGg -3'
miRNA:   3'- -GGcGCGUCuuUGguUCUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 24389 0.66 0.983193
Target:  5'- -gGCGC-GAAcuCCGGcgcGGCGCGCGCGGg -3'
miRNA:   3'- ggCGCGuCUUu-GGUU---CUGUGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.