miRNA display CGI


Results 41 - 60 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 132186 0.66 0.948866
Target:  5'- cGCUGCGCGCcgaGGCGgccg--CcgCGCu -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 15988 0.66 0.948866
Target:  5'- cGCCGCccCGCGGCGgccg--CggCGCc -3'
miRNA:   3'- aCGGCGc-GCGCCGCaaauaaGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 29533 0.66 0.959322
Target:  5'- cGCC-CGCGCGGCGcgggcgcucgaGUUCcccCGCa -3'
miRNA:   3'- aCGGcGCGCGCCGCaaa--------UAAGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 91686 0.66 0.948866
Target:  5'- gGCUGCGgcUGCGGCucccg--CUUCGCu -3'
miRNA:   3'- aCGGCGC--GCGCCGcaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 33124 0.66 0.947994
Target:  5'- cGaCCGCG-GCGGCGgcgagcgCUUcCGCg -3'
miRNA:   3'- aC-GGCGCgCGCCGCaaauaa-GAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 134039 0.66 0.956276
Target:  5'- gGCCGCG-GCGGCGccgcccgCggcCGCg -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaa-Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 104157 0.66 0.957051
Target:  5'- cGCCGCgcccuGCGCGGCca-UGUcCUUgCGCc -3'
miRNA:   3'- aCGGCG-----CGCGCCGcaaAUAaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 44450 0.66 0.962218
Target:  5'- cGCgGCGCGCGGCacgcg-----CGCg -3'
miRNA:   3'- aCGgCGCGCGCCGcaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 79074 0.66 0.957051
Target:  5'- aGCCGgGCGCGuGCGacgUGUgccCgugCGCc -3'
miRNA:   3'- aCGGCgCGCGC-CGCaa-AUAa--Gaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 77038 0.66 0.950155
Target:  5'- cGCCGCGCcgcagaaguaguaGCGGCGcggcacccgCUgcggCGCg -3'
miRNA:   3'- aCGGCGCG-------------CGCCGCaaauaa---GAa---GCG- -5'
6500 5' -53.3 NC_001847.1 + 97474 0.66 0.964294
Target:  5'- gGCCGCGCGCuaagcccGCGgg----CUUgCGCg -3'
miRNA:   3'- aCGGCGCGCGc------CGCaaauaaGAA-GCG- -5'
6500 5' -53.3 NC_001847.1 + 33061 0.66 0.960788
Target:  5'- gGCCgagGCGCuGCGGCaGUacuUUCUgCGCg -3'
miRNA:   3'- aCGG---CGCG-CGCCG-CAaauAAGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 79360 0.66 0.960788
Target:  5'- cUGCCGCGCGauGCGaagcUGUgcggCagCGCg -3'
miRNA:   3'- -ACGGCGCGCgcCGCaa--AUAa---GaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 14175 0.66 0.960788
Target:  5'- gGCCGCGCuuacGCGGCGcugggUC--CGCc -3'
miRNA:   3'- aCGGCGCG----CGCCGCaaauaAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 67206 0.66 0.955491
Target:  5'- cGCCGUGCcgaGCGGCGggcgcgcggUCgaaCGCc -3'
miRNA:   3'- aCGGCGCG---CGCCGCaaaua----AGaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 90560 0.66 0.958197
Target:  5'- cGCCGCGCGCgagGGCGacgacgagcCGCc -3'
miRNA:   3'- aCGGCGCGCG---CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 131426 0.66 0.951002
Target:  5'- gGCCGCGCGCuacgcGGCGgccgcggggccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 32941 0.66 0.946668
Target:  5'- -cCCGCGCGCGGUGcccgcggacagCGCg -3'
miRNA:   3'- acGGCGCGCGCCGCaaauaagaa--GCG- -5'
6500 5' -53.3 NC_001847.1 + 104211 0.66 0.956665
Target:  5'- cUGCCGguacuCGCGCGGCGgcacgggcacCGCg -3'
miRNA:   3'- -ACGGC-----GCGCGCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 36447 0.66 0.953079
Target:  5'- cGgCGCGCGCGGCGcgg---CUgugugaGCg -3'
miRNA:   3'- aCgGCGCGCGCCGCaaauaaGAag----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.