miRNA display CGI


Results 41 - 60 of 533 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 5' -53.3 NC_001847.1 + 122578 0.68 0.893091
Target:  5'- cGCCGCGUacGCGGCGcccGUUg--CGCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaaUAAgaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 122464 0.69 0.84806
Target:  5'- cGCCGaCGCGCaGUGcag---CUUCGCg -3'
miRNA:   3'- aCGGC-GCGCGcCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 122010 0.66 0.96789
Target:  5'- gGCCGCggcaggcgGCGCGGCGccgcccg--CGCg -3'
miRNA:   3'- aCGGCG--------CGCGCCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 121783 0.67 0.924097
Target:  5'- cGCCGUuCGCGGCuGgagcgUCcUCGCg -3'
miRNA:   3'- aCGGCGcGCGCCG-CaaauaAGaAGCG- -5'
6500 5' -53.3 NC_001847.1 + 121316 0.8 0.309987
Target:  5'- cGCCGCGCGCGGCaaacgaUCUcgcUCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGcaaauaAGA---AGCG- -5'
6500 5' -53.3 NC_001847.1 + 120780 0.73 0.686687
Target:  5'- cGaCCGCGCGCuGGCGgc-GUUCccCGCa -3'
miRNA:   3'- aC-GGCGCGCG-CCGCaaaUAAGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 120703 0.67 0.934753
Target:  5'- gGCCGCGCacccCGGCGccg--UCgaggcagUCGCg -3'
miRNA:   3'- aCGGCGCGc---GCCGCaaauaAGa------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 120251 0.69 0.871588
Target:  5'- gGCCuGCGCGCGGaCGgccccgUAgcgUUCGCu -3'
miRNA:   3'- aCGG-CGCGCGCC-GCaa----AUaagAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 120199 0.71 0.75753
Target:  5'- gGCCGCGCgaGCGGCGcccg--CU-CGCa -3'
miRNA:   3'- aCGGCGCG--CGCCGCaaauaaGAaGCG- -5'
6500 5' -53.3 NC_001847.1 + 120085 0.73 0.675258
Target:  5'- aGCCGCGCGgGGCGggagauaaagCGCc -3'
miRNA:   3'- aCGGCGCGCgCCGCaaauaagaa-GCG- -5'
6500 5' -53.3 NC_001847.1 + 119912 0.66 0.953079
Target:  5'- cGCCGcCGC-CGGCGcgUA--CUUCGUc -3'
miRNA:   3'- aCGGC-GCGcGCCGCaaAUaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 119602 0.66 0.965302
Target:  5'- gGCCGCGCGCgcaccGGCGccagcagccCGCg -3'
miRNA:   3'- aCGGCGCGCG-----CCGCaaauaagaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 118652 0.67 0.930082
Target:  5'- gGCCGCGCGCgggaGGCGcaagagaggugUCcgCGCu -3'
miRNA:   3'- aCGGCGCGCG----CCGCaaaua------AGaaGCG- -5'
6500 5' -53.3 NC_001847.1 + 118373 0.69 0.886157
Target:  5'- cGCCGUgcgGCGCGGC----AUUCUcaucggccUCGCg -3'
miRNA:   3'- aCGGCG---CGCGCCGcaaaUAAGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 117407 0.76 0.481188
Target:  5'- cGgUGCGCGCGGUGgacg--CUUCGCg -3'
miRNA:   3'- aCgGCGCGCGCCGCaaauaaGAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 116454 0.71 0.75753
Target:  5'- cGCUGgcgcaCGCGCGGCGcg-GUUCUgcucagcgUCGCg -3'
miRNA:   3'- aCGGC-----GCGCGCCGCaaaUAAGA--------AGCG- -5'
6500 5' -53.3 NC_001847.1 + 116396 0.7 0.831334
Target:  5'- aGCCGCG-GCGGCGgcgc-UCUggGCc -3'
miRNA:   3'- aCGGCGCgCGCCGCaaauaAGAagCG- -5'
6500 5' -53.3 NC_001847.1 + 115818 0.71 0.795671
Target:  5'- cGCUGCGCuGCGGCGggcucugcggaUUUAUaCUUgGCc -3'
miRNA:   3'- aCGGCGCG-CGCCGC-----------AAAUAaGAAgCG- -5'
6500 5' -53.3 NC_001847.1 + 115704 0.67 0.92955
Target:  5'- gGCCcggcagcggGCGCGCGGCcUUUGgcgcucccgCUUUGCc -3'
miRNA:   3'- aCGG---------CGCGCGCCGcAAAUaa-------GAAGCG- -5'
6500 5' -53.3 NC_001847.1 + 114147 0.72 0.71651
Target:  5'- aGCCGCGCGCGGUGccgAUUgggaggcCUagugCGCg -3'
miRNA:   3'- aCGGCGCGCGCCGCaaaUAA-------GAa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.