miRNA display CGI


Results 41 - 60 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 128086 0.66 0.992414
Target:  5'- cGCCGCGU---GCCUuggUGGCGaaaGCCCa -3'
miRNA:   3'- -CGGCGCGcucUGGGuaaAUUGU---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 127350 0.69 0.954144
Target:  5'- uGCCGCggcaggggcgGCGGGGCCCGagccuCGGCaCCa -3'
miRNA:   3'- -CGGCG----------CGCUCUGGGUaaauuGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 127004 0.75 0.697012
Target:  5'- aGCCcCGCGAGGCUCGU----CGGCCCg -3'
miRNA:   3'- -CGGcGCGCUCUGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 126914 0.66 0.992414
Target:  5'- aGCUgGCGCGGGuCCCAg--GGCucgcACUCg -3'
miRNA:   3'- -CGG-CGCGCUCuGGGUaaaUUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 126554 0.71 0.907434
Target:  5'- cGCCGCcccugGCGGGGCCUgAUUUGcCuguGCCCu -3'
miRNA:   3'- -CGGCG-----CGCUCUGGG-UAAAUuGu--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 126277 0.72 0.857184
Target:  5'- cGUCG-GCGAGuuCCUAUggaAGCAACCCa -3'
miRNA:   3'- -CGGCgCGCUCu-GGGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 125214 0.69 0.958084
Target:  5'- gGCCGCgGCGAGcguGCUCGUccgcgggGGCGggGCCCg -3'
miRNA:   3'- -CGGCG-CGCUC---UGGGUAaa-----UUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 125068 0.68 0.974325
Target:  5'- cCCGCGCGcggcggggcgcuGGGCCCGc---GCGGCCa -3'
miRNA:   3'- cGGCGCGC------------UCUGGGUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 124738 0.7 0.91959
Target:  5'- aCCGCGCGggggaGGGCCguCAUaaAGCGGCCCc -3'
miRNA:   3'- cGGCGCGC-----UCUGG--GUAaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 124647 0.67 0.981747
Target:  5'- aGCaGCGCGGGGCCgucggggaAGCCCa -3'
miRNA:   3'- -CGgCGCGCUCUGGguaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 124582 0.68 0.971518
Target:  5'- cGCCgGCGCcGGGCCCGgcgc-CGGCCg -3'
miRNA:   3'- -CGG-CGCGcUCUGGGUaaauuGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 124445 0.72 0.857184
Target:  5'- gGCCgGCGCGGGccgcGCCCGggc-GCGACCg -3'
miRNA:   3'- -CGG-CGCGCUC----UGGGUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 123960 0.75 0.717676
Target:  5'- cCCGCGCG-GACCagc--GGCAGCCCc -3'
miRNA:   3'- cGGCGCGCuCUGGguaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 123579 0.69 0.957701
Target:  5'- cGCCGCgaGCGGGGCCgGaccgggcUUUGcaAGCCCa -3'
miRNA:   3'- -CGGCG--CGCUCUGGgU-------AAAUugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 123498 0.67 0.979326
Target:  5'- cGCCGCaaGCGGGGCCgGggccagGGCuGCCg -3'
miRNA:   3'- -CGGCG--CGCUCUGGgUaaa---UUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 123453 0.72 0.872715
Target:  5'- uGCCGgGCuuGGCCCGgc-GACGGCCg -3'
miRNA:   3'- -CGGCgCGcuCUGGGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 123330 0.72 0.849089
Target:  5'- cCCGCGCGcuGugCCGUcUGACGgaaagcACCCg -3'
miRNA:   3'- cGGCGCGCu-CugGGUAaAUUGU------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 123056 0.68 0.97378
Target:  5'- gGCCGCGgGcgccGGACCCGcggcgcuccGCGGCCUc -3'
miRNA:   3'- -CGGCGCgC----UCUGGGUaaau-----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 122825 0.66 0.992414
Target:  5'- aGCCG-GCGGGcgcGCCCAccgGGCccgcGCCCu -3'
miRNA:   3'- -CGGCgCGCUC---UGGGUaaaUUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 122700 0.72 0.872715
Target:  5'- cGCCGCGCGcgcuGugCCGgcgccuuGgAGCCCg -3'
miRNA:   3'- -CGGCGCGCu---CugGGUaaau---UgUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.