miRNA display CGI


Results 1 - 20 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 120327 0.66 0.992414
Target:  5'- aCCGCGCGcaGGGCgCCGc---GCAGCuCCg -3'
miRNA:   3'- cGGCGCGC--UCUG-GGUaaauUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 30938 0.66 0.991289
Target:  5'- cCCGCGCGAGuACC-----GGCAGCgCg -3'
miRNA:   3'- cGGCGCGCUC-UGGguaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 40918 0.66 0.991289
Target:  5'- cCCGCGCGGGcGCCCcgcc-GCGAgcUCCg -3'
miRNA:   3'- cGGCGCGCUC-UGGGuaaauUGUU--GGG- -5'
6501 3' -51.1 NC_001847.1 + 13686 1.16 0.003024
Target:  5'- aGCCGCGCGAGACCCAUUUAACAACCCg -3'
miRNA:   3'- -CGGCGCGCUCUGGGUAAAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 34600 0.66 0.992414
Target:  5'- cGCCGCgGCcGGcuccccgcccACCCAcuccGCGACCCg -3'
miRNA:   3'- -CGGCG-CGcUC----------UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 5444 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 128086 0.66 0.992414
Target:  5'- cGCCGCGU---GCCUuggUGGCGaaaGCCCa -3'
miRNA:   3'- -CGGCGCGcucUGGGuaaAUUGU---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 113764 0.66 0.992414
Target:  5'- cGUCGC-UGAGAgCCGcccgaGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUCUgGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 28557 0.66 0.992414
Target:  5'- gGCgGCGCGGGcgacACCCGcgagggccucUggGACuGCCCc -3'
miRNA:   3'- -CGgCGCGCUC----UGGGU----------AaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 81240 0.66 0.992199
Target:  5'- uCCGgGCGGGGCCgucgcgagGACGggggGCCCg -3'
miRNA:   3'- cGGCgCGCUCUGGguaaa---UUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 619 0.66 0.992414
Target:  5'- aGCgGCGCGcGGCCCGc---GCcuCCCc -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaauUGuuGGG- -5'
6501 3' -51.1 NC_001847.1 + 53849 0.66 0.992414
Target:  5'- aGCCgGCGCGggggucagggGGugCUGUggGGCGGCCg -3'
miRNA:   3'- -CGG-CGCGC----------UCugGGUAaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 102144 0.66 0.992414
Target:  5'- uCCGCGCGA--CCaCGgcggcGCGGCCCg -3'
miRNA:   3'- cGGCGCGCUcuGG-GUaaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 37671 0.66 0.992414
Target:  5'- aGCC-CGCG-GGCUUAgcgcGCGGCCCu -3'
miRNA:   3'- -CGGcGCGCuCUGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 87121 0.66 0.992414
Target:  5'- gGCCaGCGCGcGGCUCGgg-GGCuACCUc -3'
miRNA:   3'- -CGG-CGCGCuCUGGGUaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 93680 0.66 0.992414
Target:  5'- uGCCGCGCGuGcagcucucguuCCgGUUcAugGGCCCc -3'
miRNA:   3'- -CGGCGCGCuCu----------GGgUAAaUugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 45219 0.66 0.992199
Target:  5'- cGCCGcCGCGAGcgcgGCCUcgcgcggcACAACCUc -3'
miRNA:   3'- -CGGC-GCGCUC----UGGGuaaau---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 78459 0.66 0.991289
Target:  5'- cGCCGCGCGccAGGuacgucUCCA---AGCuGCCCg -3'
miRNA:   3'- -CGGCGCGC--UCU------GGGUaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 64764 0.66 0.992414
Target:  5'- gGCCaGCGCGAGcucgcGCCCc---GGCGcCCCc -3'
miRNA:   3'- -CGG-CGCGCUC-----UGGGuaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 131609 0.66 0.992414
Target:  5'- cGCCGCGCucgcGGCCguaGUcgGccACGGCCCg -3'
miRNA:   3'- -CGGCGCGcu--CUGGg--UAaaU--UGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.