miRNA display CGI


Results 21 - 40 of 511 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 132116 0.67 0.965775
Target:  5'- gGCGCGcAGACGUGAccGCCCcuauuGGGcGGCg -3'
miRNA:   3'- -CGUGUuUCUGCAUUu-CGGG-----CCU-CCGg -5'
6502 5' -51.8 NC_001847.1 + 131778 0.66 0.978036
Target:  5'- -uGCAGAGccugcggcgcGCGUAcgcccccauggccuaCCCGGAGGCCg -3'
miRNA:   3'- cgUGUUUC----------UGCAUuuc------------GGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 131548 0.69 0.926187
Target:  5'- gGCuGCAGAG-CGcGAAGCUCGcGGGCCc -3'
miRNA:   3'- -CG-UGUUUCuGCaUUUCGGGCcUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 131305 0.66 0.983855
Target:  5'- uGCugAcgccuucuggcGAGGCGU--GGCCCGGcAGcgcGCCg -3'
miRNA:   3'- -CGugU-----------UUCUGCAuuUCGGGCC-UC---CGG- -5'
6502 5' -51.8 NC_001847.1 + 131127 0.72 0.816241
Target:  5'- cCGCgAGAGGCGggcgccGGGCCCGGcgccccgcgGGGCCg -3'
miRNA:   3'- cGUG-UUUCUGCau----UUCGGGCC---------UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 131078 0.68 0.954782
Target:  5'- -gGCcGAGGC-UGAGGCCgGGAcuggGGCCg -3'
miRNA:   3'- cgUGuUUCUGcAUUUCGGgCCU----CCGG- -5'
6502 5' -51.8 NC_001847.1 + 131017 0.68 0.954782
Target:  5'- gGCcCGAGGACGaugggggcGAGGCCCgGGAGGg- -3'
miRNA:   3'- -CGuGUUUCUGCa-------UUUCGGG-CCUCCgg -5'
6502 5' -51.8 NC_001847.1 + 130773 0.67 0.975788
Target:  5'- cGCGCGcucgcggucgcggugGAGGCGgccgcGGCCggggCGGAGGCg -3'
miRNA:   3'- -CGUGU---------------UUCUGCauu--UCGG----GCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 130706 0.67 0.96898
Target:  5'- uCGCGGAGuGCGccGAGGCCgaGGGGGCg -3'
miRNA:   3'- cGUGUUUC-UGCa-UUUCGGg-CCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 130588 0.71 0.842219
Target:  5'- aGCAgCGAGGACGacggcgccGGAGaCgCGGGGGCCa -3'
miRNA:   3'- -CGU-GUUUCUGCa-------UUUC-GgGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 130497 0.73 0.778198
Target:  5'- gGCGCGucgggcuGAGGCGcgcGAGCgCCGGcGGGCCg -3'
miRNA:   3'- -CGUGU-------UUCUGCau-UUCG-GGCC-UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 130442 0.66 0.981855
Target:  5'- cCGCGGAccucggcccGACGggGGGCUCGGAGGa- -3'
miRNA:   3'- cGUGUUU---------CUGCauUUCGGGCCUCCgg -5'
6502 5' -51.8 NC_001847.1 + 130239 0.66 0.979674
Target:  5'- gGCGCGGucGGuguCGUucgcagcGGCgCGGGGGCCc -3'
miRNA:   3'- -CGUGUU--UCu--GCAuu-----UCGgGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 130212 0.74 0.709248
Target:  5'- gGCGCgGAGGGCGcggGAAGCgCGGcGGCCc -3'
miRNA:   3'- -CGUG-UUUCUGCa--UUUCGgGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 129770 0.66 0.981855
Target:  5'- cCGCucGGACcgccGGAGCCUGGGcccGGCCg -3'
miRNA:   3'- cGUGuuUCUGca--UUUCGGGCCU---CCGG- -5'
6502 5' -51.8 NC_001847.1 + 129349 0.75 0.678039
Target:  5'- aGCGCAAGcGCGgugccGGGCCCGG-GGCUa -3'
miRNA:   3'- -CGUGUUUcUGCau---UUCGGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 128760 0.67 0.971965
Target:  5'- -aAUGGAG-CGgcUAGGGCCaaaGGGGGCCg -3'
miRNA:   3'- cgUGUUUCuGC--AUUUCGGg--CCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 127925 0.68 0.958682
Target:  5'- aGCGCAGAGAgaagAGAGCgggCGGcGGCCg -3'
miRNA:   3'- -CGUGUUUCUgca-UUUCGg--GCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 127353 0.66 0.983274
Target:  5'- cGCgGCAGGGGCGgcgGGGCCCGagccucggcaccaacGGCCg -3'
miRNA:   3'- -CG-UGUUUCUGCau-UUCGGGCcu-------------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 127143 0.71 0.8397
Target:  5'- cGCGCGGGGGCGaUGuccaaguggaggggGGGCCCGaGcaGGGCCc -3'
miRNA:   3'- -CGUGUUUCUGC-AU--------------UUCGGGC-C--UCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.