miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 77470 0.66 0.839747
Target:  5'- gGCGGGCgCCGGGcGCCcg-GCccggcccgccggcccGAGUCGg -3'
miRNA:   3'- -CGUCCGgGGCUC-CGGuuaCG---------------UUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 98741 0.66 0.836435
Target:  5'- -gGGGCCggggCCGGGGCCGggGCA--UCGc -3'
miRNA:   3'- cgUCCGG----GGCUCCGGUuaCGUucAGU- -5'
6503 3' -57.2 NC_001847.1 + 129319 0.66 0.836435
Target:  5'- gGCGGGCCUgccgggcgCGGGGCCGGggGCGuucGGcCAu -3'
miRNA:   3'- -CGUCCGGG--------GCUCCGGUUa-CGU---UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 26506 0.66 0.836435
Target:  5'- gGCGGGCCUgccgggcgCGGGGCCGGggGCGuucGGcCAu -3'
miRNA:   3'- -CGUCCGGG--------GCUCCGGUUa-CGU---UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 118802 0.66 0.836435
Target:  5'- cCAGcGCCUCcAGGCCG-UGCcGGUCGu -3'
miRNA:   3'- cGUC-CGGGGcUCCGGUuACGuUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 121907 0.66 0.828025
Target:  5'- cGCGuGGCCCCGcuGGCCAucGCGgAGcUCGc -3'
miRNA:   3'- -CGU-CCGGGGCu-CCGGUuaCGU-UC-AGU- -5'
6503 3' -57.2 NC_001847.1 + 116657 0.66 0.828025
Target:  5'- cGCGGGCaCgCUGGuGGCCugcGUGUggGUCc -3'
miRNA:   3'- -CGUCCG-G-GGCU-CCGGu--UACGuuCAGu -5'
6503 3' -57.2 NC_001847.1 + 39191 0.66 0.828025
Target:  5'- uCAGGCCCUGGGaGCgg--GCGauGGUCAu -3'
miRNA:   3'- cGUCCGGGGCUC-CGguuaCGU--UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 46934 0.66 0.828025
Target:  5'- cCGGGCUCCG-GGCCGcGUGCGgcgaAGcCAa -3'
miRNA:   3'- cGUCCGGGGCuCCGGU-UACGU----UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 123781 0.66 0.822891
Target:  5'- uGCAuuGGCCUCGGGGCCugcgcggcggcggcaGcgGCAGG-CGc -3'
miRNA:   3'- -CGU--CCGGGGCUCCGG---------------UuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 109191 0.66 0.819434
Target:  5'- -aAGGCgUCGGGGCgGGUGCGA-UCGg -3'
miRNA:   3'- cgUCCGgGGCUCCGgUUACGUUcAGU- -5'
6503 3' -57.2 NC_001847.1 + 77664 0.66 0.810669
Target:  5'- cGCGGGCgCCGAgguacugcuGGCCGA-GCGcuUCAa -3'
miRNA:   3'- -CGUCCGgGGCU---------CCGGUUaCGUucAGU- -5'
6503 3' -57.2 NC_001847.1 + 61759 0.66 0.810669
Target:  5'- uGCgAGGCCCaCGGguuaacgguGGCgCGGUGCGGGUgGg -3'
miRNA:   3'- -CG-UCCGGG-GCU---------CCG-GUUACGUUCAgU- -5'
6503 3' -57.2 NC_001847.1 + 102835 0.66 0.810669
Target:  5'- aGCGGGUCCCGuu-CCGcgGCGGcGUCGc -3'
miRNA:   3'- -CGUCCGGGGCuccGGUuaCGUU-CAGU- -5'
6503 3' -57.2 NC_001847.1 + 119121 0.66 0.810669
Target:  5'- gGCAGGCa-UGGGGCCGucgaugGCGAGcUCGu -3'
miRNA:   3'- -CGUCCGggGCUCCGGUua----CGUUC-AGU- -5'
6503 3' -57.2 NC_001847.1 + 86510 0.66 0.810669
Target:  5'- gGCGGcGCCCCGccGCCGcgGCGu-UCAc -3'
miRNA:   3'- -CGUC-CGGGGCucCGGUuaCGUucAGU- -5'
6503 3' -57.2 NC_001847.1 + 119999 0.66 0.810669
Target:  5'- aGC-GGCCCCGAcGCgCAGUaGCAAGg-- -3'
miRNA:   3'- -CGuCCGGGGCUcCG-GUUA-CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 83038 0.66 0.810669
Target:  5'- cGCGGGCCgCGuGGCCAugacCGAGcgCAc -3'
miRNA:   3'- -CGUCCGGgGCuCCGGUuac-GUUCa-GU- -5'
6503 3' -57.2 NC_001847.1 + 103497 0.66 0.810669
Target:  5'- cGCGGGCUCCG-GGCCcgccgaaacaaAGUGCAcuAG-CGc -3'
miRNA:   3'- -CGUCCGGGGCuCCGG-----------UUACGU--UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 16692 0.66 0.810669
Target:  5'- cGCAGGCa-CGAGGCCGccaccaGCAGGa-- -3'
miRNA:   3'- -CGUCCGggGCUCCGGUua----CGUUCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.