miRNA display CGI


Results 1 - 20 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 81282 0.66 0.85979
Target:  5'- cGCggcgGUCG-GCgccgccagcgccgccAGCGCCGCCGCUGc-- -3'
miRNA:   3'- -CGa---UAGUaCG---------------UCGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 18415 0.66 0.85979
Target:  5'- cGCgg-CGUGCAgggccuuggccacguGCGCCGCgGCCa--- -3'
miRNA:   3'- -CGauaGUACGU---------------CGCGGCGgCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 79376 0.66 0.856686
Target:  5'- aGCUGUgcgGCAGCGCgCGgCuCGCCG-UGg -3'
miRNA:   3'- -CGAUAguaCGUCGCG-GC-G-GCGGCuAC- -5'
6503 5' -56.9 NC_001847.1 + 11505 0.66 0.856686
Target:  5'- gGCgccuUCA-GCcaagGGCGCCGCCccgGCCGAg- -3'
miRNA:   3'- -CGau--AGUaCG----UCGCGGCGG---CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 21966 0.66 0.856686
Target:  5'- cGCUGggccGCGGCGCCgguuGCCGCCcGcgGu -3'
miRNA:   3'- -CGAUaguaCGUCGCGG----CGGCGG-CuaC- -5'
6503 5' -56.9 NC_001847.1 + 49305 0.66 0.856686
Target:  5'- cGCUGcug-GCGGUGCUGCCcCUGGUGc -3'
miRNA:   3'- -CGAUaguaCGUCGCGGCGGcGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 94831 0.66 0.856686
Target:  5'- aGCUAUCG-GUGGCGUCGgagucugCGCCGAg- -3'
miRNA:   3'- -CGAUAGUaCGUCGCGGCg------GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 80653 0.66 0.856686
Target:  5'- ----cCcgGCcccGGCGCCGCCGUCGuUGu -3'
miRNA:   3'- cgauaGuaCG---UCGCGGCGGCGGCuAC- -5'
6503 5' -56.9 NC_001847.1 + 4983 0.66 0.856686
Target:  5'- aGCUGggGUGCGGCgGCCGCgGCa---- -3'
miRNA:   3'- -CGAUagUACGUCG-CGGCGgCGgcuac -5'
6503 5' -56.9 NC_001847.1 + 99239 0.66 0.856686
Target:  5'- aGCUccCAcGCGccgucccacGcCGCCGCCGCCGAc- -3'
miRNA:   3'- -CGAuaGUaCGU---------C-GCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 86947 0.66 0.856686
Target:  5'- ----aCA-GCAGCGCCGCgCGCCc--- -3'
miRNA:   3'- cgauaGUaCGUCGCGGCG-GCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 52086 0.66 0.856686
Target:  5'- cGCUcUUcgGCcGCGCCGCgGCCc--- -3'
miRNA:   3'- -CGAuAGuaCGuCGCGGCGgCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 98774 0.66 0.848782
Target:  5'- cGCUGccCGggccgcgGCGGCGCCGCguggcgCGCCGcgGc -3'
miRNA:   3'- -CGAUa-GUa------CGUCGCGGCG------GCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 78248 0.66 0.848782
Target:  5'- cGCccgCcgGCGuCGCCGUCGCCGGc- -3'
miRNA:   3'- -CGauaGuaCGUcGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 3217 0.66 0.848782
Target:  5'- gGCgcaCGUGCcuccGCGCCGCCGCgGc-- -3'
miRNA:   3'- -CGauaGUACGu---CGCGGCGGCGgCuac -5'
6503 5' -56.9 NC_001847.1 + 29172 0.66 0.848782
Target:  5'- cGCUGgag-GCGGCccGCCgcGCCGCCGGc- -3'
miRNA:   3'- -CGAUaguaCGUCG--CGG--CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 91197 0.66 0.848782
Target:  5'- cGC-GUCGcGC-GCGUCGCCGUCGGa- -3'
miRNA:   3'- -CGaUAGUaCGuCGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 131985 0.66 0.848782
Target:  5'- cGCUGgag-GCGGCccGCCgcGCCGCCGGc- -3'
miRNA:   3'- -CGAUaguaCGUCG--CGG--CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 105913 0.66 0.848782
Target:  5'- cGCgg-CcgGCAGgccgcggccCGCCGCgGCCGAg- -3'
miRNA:   3'- -CGauaGuaCGUC---------GCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 13541 0.66 0.848782
Target:  5'- cGCUAg---GCAGCGCgaCGCUGCaCGAc- -3'
miRNA:   3'- -CGAUaguaCGUCGCG--GCGGCG-GCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.