miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 101161 0.66 0.356448
Target:  5'- gCCGGGGcCGGGgccGGGGucGGGGCGCggUCUAa -3'
miRNA:   3'- -GGCCCCcGCCC---CCCU--CCUCGCG--GGAU- -5'
6507 3' -68.6 NC_001847.1 + 119651 0.66 0.356448
Target:  5'- aCGGGGcagcCGGGcGGGAGGgcaacGGCgGCCCc- -3'
miRNA:   3'- gGCCCCc---GCCC-CCCUCC-----UCG-CGGGau -5'
6507 3' -68.6 NC_001847.1 + 76655 0.66 0.34918
Target:  5'- cCCGaGGGC--GGGGAGG-GCGCCUUu -3'
miRNA:   3'- -GGCcCCCGccCCCCUCCuCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 130007 0.66 0.342018
Target:  5'- gUGGGGGUGGGGGGGGGgaAGgGa---- -3'
miRNA:   3'- gGCCCCCGCCCCCCUCC--UCgCgggau -5'
6507 3' -68.6 NC_001847.1 + 21506 0.66 0.342018
Target:  5'- gCCGGGcgcgccucGGCGGGGGccgcgcGGGccaacGCGCCCa- -3'
miRNA:   3'- -GGCCC--------CCGCCCCCc-----UCCu----CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 108098 0.66 0.342018
Target:  5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3'
miRNA:   3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 5285 0.66 0.342018
Target:  5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3'
miRNA:   3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 27194 0.66 0.342018
Target:  5'- gUGGGGGUGGGGGGGGGgaAGgGa---- -3'
miRNA:   3'- gGCCCCCGCCCCCCUCC--UCgCgggau -5'
6507 3' -68.6 NC_001847.1 + 51528 0.66 0.334963
Target:  5'- gCCGGcaGGCGGGGGc---GGCGCCCa- -3'
miRNA:   3'- -GGCCc-CCGCCCCCcuccUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 21568 0.66 0.334963
Target:  5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3'
miRNA:   3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 124381 0.66 0.334963
Target:  5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3'
miRNA:   3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 29601 0.66 0.334263
Target:  5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3'
miRNA:   3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 132414 0.66 0.334263
Target:  5'- gCCGGGGGCcgguggaaguGGaGGuGGAGGAcaugagggccgggGCGCCg-- -3'
miRNA:   3'- -GGCCCCCG----------CC-CC-CCUCCU-------------CGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 115927 0.66 0.334263
Target:  5'- -gGGGGGCugccgucGGGaacgagcaGGGAGGGGuCGCCgCUGg -3'
miRNA:   3'- ggCCCCCG-------CCC--------CCCUCCUC-GCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 105585 0.66 0.327326
Target:  5'- gCCGGcacGGCGuccgugcGGGGGAacucGAGCGCCCg- -3'
miRNA:   3'- -GGCCc--CCGC-------CCCCCUc---CUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 124720 0.66 0.323897
Target:  5'- gCGGGGGCggcagcgcgaaccgcGcGGGGGAGGgccgucauaaAGCgGCCCc- -3'
miRNA:   3'- gGCCCCCG---------------C-CCCCCUCC----------UCG-CGGGau -5'
6507 3' -68.6 NC_001847.1 + 31816 0.66 0.321174
Target:  5'- gUGGGcGGCGcGGGGGcagagugcgAGGAcccuacguucgcGCGCCCg- -3'
miRNA:   3'- gGCCC-CCGC-CCCCC---------UCCU------------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 90754 0.67 0.31444
Target:  5'- gCCGGGcccCGGGaGcGGGAGCGCCCUu -3'
miRNA:   3'- -GGCCCcc-GCCCcCcUCCUCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 16584 0.67 0.31444
Target:  5'- gCGGGGuCGGGGcGGcguGGGGUGCCg-- -3'
miRNA:   3'- gGCCCCcGCCCC-CCu--CCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 121401 0.67 0.31444
Target:  5'- aCCGGGGGCaGGagcugcguggaGGGcGGAGCcguugagcgGCCCg- -3'
miRNA:   3'- -GGCCCCCGcCC-----------CCCuCCUCG---------CGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.