miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 3' -48.4 NC_001847.1 + 85765 0.66 0.998359
Target:  5'- ---gGCAacgccGggGGCAgcGGCCGAugcgguGCGCg -3'
miRNA:   3'- uaaaCGUa----CuuUCGUa-CCGGCU------UGCG- -5'
6511 3' -48.4 NC_001847.1 + 19758 0.66 0.998359
Target:  5'- ---aGCggGAAGGCGgggugcgGGCUcGGCGCa -3'
miRNA:   3'- uaaaCGuaCUUUCGUa------CCGGcUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 38708 0.66 0.998359
Target:  5'- --gUGCGUGAAGGCAUa--CGAGCa- -3'
miRNA:   3'- uaaACGUACUUUCGUAccgGCUUGcg -5'
6511 3' -48.4 NC_001847.1 + 131136 0.66 0.998359
Target:  5'- --cUGCucgGggGGCGgacuguuaacuUGGCCGcgcuGGCGCu -3'
miRNA:   3'- uaaACGua-CuuUCGU-----------ACCGGC----UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 38089 0.66 0.998359
Target:  5'- ---cGCGgucgggGAAAGCAgc-CCGGACGCc -3'
miRNA:   3'- uaaaCGUa-----CUUUCGUaccGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 21618 0.66 0.998359
Target:  5'- ---cGC-UGgcGGCGcuUGGCCG-GCGCg -3'
miRNA:   3'- uaaaCGuACuuUCGU--ACCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 48839 0.66 0.998359
Target:  5'- ---cGCGcGggGGCGccucGGCCGcgcGGCGCg -3'
miRNA:   3'- uaaaCGUaCuuUCGUa---CCGGC---UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 124431 0.66 0.998359
Target:  5'- ---cGC-UGgcGGCGcuUGGCCG-GCGCg -3'
miRNA:   3'- uaaaCGuACuuUCGU--ACCGGCuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 10130 0.66 0.998359
Target:  5'- ---gGCGaGcgGGCccGGCCGuAGCGCg -3'
miRNA:   3'- uaaaCGUaCuuUCGuaCCGGC-UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 33012 0.66 0.998016
Target:  5'- ---gGCcgGggGGCGcgcggggcgaGGCgCGGACGCg -3'
miRNA:   3'- uaaaCGuaCuuUCGUa---------CCG-GCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 52281 0.66 0.998016
Target:  5'- ---cGCAcGGgcGAGCAcGuGCCGGACGUa -3'
miRNA:   3'- uaaaCGUaCU--UUCGUaC-CGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 18019 0.66 0.998016
Target:  5'- ---gGCGUgGggGGCGUuGcGCCGGugGUc -3'
miRNA:   3'- uaaaCGUA-CuuUCGUA-C-CGGCUugCG- -5'
6511 3' -48.4 NC_001847.1 + 51990 0.66 0.998016
Target:  5'- ---gGCGuUGGGAggucGCcgGGCgGGACGCa -3'
miRNA:   3'- uaaaCGU-ACUUU----CGuaCCGgCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 21000 0.66 0.997978
Target:  5'- --cUGCAUGcuGGUgcGaacucacGCCGAGCGCg -3'
miRNA:   3'- uaaACGUACuuUCGuaC-------CGGCUUGCG- -5'
6511 3' -48.4 NC_001847.1 + 51838 0.66 0.997614
Target:  5'- ---cGCcgGGcaaCGUGGCCGAgcugGCGCa -3'
miRNA:   3'- uaaaCGuaCUuucGUACCGGCU----UGCG- -5'
6511 3' -48.4 NC_001847.1 + 5987 0.66 0.997614
Target:  5'- cUUUGCG-GggGGCA--GCCGAACa- -3'
miRNA:   3'- uAAACGUaCuuUCGUacCGGCUUGcg -5'
6511 3' -48.4 NC_001847.1 + 81409 0.66 0.997614
Target:  5'- ---cGCGUGA---CAUGGUCGcaGGCGCa -3'
miRNA:   3'- uaaaCGUACUuucGUACCGGC--UUGCG- -5'
6511 3' -48.4 NC_001847.1 + 135000 0.66 0.997614
Target:  5'- ---aGUuUGGAAGCAagaUGGCC--GCGCa -3'
miRNA:   3'- uaaaCGuACUUUCGU---ACCGGcuUGCG- -5'
6511 3' -48.4 NC_001847.1 + 80822 0.66 0.997614
Target:  5'- ---cGCGUGAGgcgccggauAGCGaGGCCGAcAUGUg -3'
miRNA:   3'- uaaaCGUACUU---------UCGUaCCGGCU-UGCG- -5'
6511 3' -48.4 NC_001847.1 + 64060 0.66 0.997614
Target:  5'- ---cGCcucUGGccGCGccGGCCGAGCGCc -3'
miRNA:   3'- uaaaCGu--ACUuuCGUa-CCGGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.