miRNA display CGI


Results 1 - 20 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6511 5' -65 NC_001847.1 + 3515 0.66 0.495686
Target:  5'- aCGCuCCCGGUGaugaacgagcuguGGCCCcggcaGCCcUGCACg -3'
miRNA:   3'- gGCGcGGGCCGU-------------CCGGG-----CGGaACGUG- -5'
6511 5' -65 NC_001847.1 + 106328 0.66 0.495686
Target:  5'- aCGCuCCCGGUGaugaacgagcuguGGCCCcggcaGCCcUGCACg -3'
miRNA:   3'- gGCGcGGGCCGU-------------CCGGG-----CGGaACGUG- -5'
6511 5' -65 NC_001847.1 + 89066 0.66 0.494771
Target:  5'- -gGCGCCUGGCGGacguguuuGCCCaCCgggaguaccgcgUGCGCa -3'
miRNA:   3'- ggCGCGGGCCGUC--------CGGGcGGa-----------ACGUG- -5'
6511 5' -65 NC_001847.1 + 26497 0.66 0.493857
Target:  5'- uCCGCGgcCCCGGCcacuucugcagcgucGCCCGCCgucccccggaGCACg -3'
miRNA:   3'- -GGCGC--GGGCCGuc-------------CGGGCGGaa--------CGUG- -5'
6511 5' -65 NC_001847.1 + 47690 0.66 0.487483
Target:  5'- gCGCGCgCC-GCGGGgCCGUUgaGCGCg -3'
miRNA:   3'- gGCGCG-GGcCGUCCgGGCGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 115536 0.66 0.487483
Target:  5'- cCCGgGCCCGaGCucGGGCCCGgaUCgggGCGg -3'
miRNA:   3'- -GGCgCGGGC-CG--UCCGGGC--GGaa-CGUg -5'
6511 5' -65 NC_001847.1 + 119608 0.66 0.487483
Target:  5'- gCGCGCaCCGGCGccagcagcccgcGGCucCCGCCgaGcCGCa -3'
miRNA:   3'- gGCGCG-GGCCGU------------CCG--GGCGGaaC-GUG- -5'
6511 5' -65 NC_001847.1 + 110940 0.66 0.487483
Target:  5'- aCCGCGgggCgGGCGGGCCgacgaGCCUcGCGg -3'
miRNA:   3'- -GGCGCg--GgCCGUCCGGg----CGGAaCGUg -5'
6511 5' -65 NC_001847.1 + 129415 0.66 0.487483
Target:  5'- aCCGC-CCCgcgGGCAGGUaaGCCcucccagGCGCa -3'
miRNA:   3'- -GGCGcGGG---CCGUCCGggCGGaa-----CGUG- -5'
6511 5' -65 NC_001847.1 + 120698 0.66 0.487483
Target:  5'- gCCGCGgCCGcGCAccccGGCgCCGUCgagGCAg -3'
miRNA:   3'- -GGCGCgGGC-CGU----CCG-GGCGGaa-CGUg -5'
6511 5' -65 NC_001847.1 + 71997 0.66 0.487483
Target:  5'- uCCGCaa-CGuCGGGCCCGaCCUggUGCACa -3'
miRNA:   3'- -GGCGcggGCcGUCCGGGC-GGA--ACGUG- -5'
6511 5' -65 NC_001847.1 + 77381 0.66 0.487483
Target:  5'- gCCgGCGCCCGcucucGCucguGGCCCGgCg-GCACu -3'
miRNA:   3'- -GG-CGCGGGC-----CGu---CCGGGCgGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 6357 0.66 0.487483
Target:  5'- aCCGCGCC--GCGGGCguagCCGCUgcgGCAg -3'
miRNA:   3'- -GGCGCGGgcCGUCCG----GGCGGaa-CGUg -5'
6511 5' -65 NC_001847.1 + 103351 0.66 0.487483
Target:  5'- aCCGCcacgGCCguaaGGCAGGCCguguugGCCggcGCGCg -3'
miRNA:   3'- -GGCG----CGGg---CCGUCCGGg-----CGGaa-CGUG- -5'
6511 5' -65 NC_001847.1 + 82703 0.66 0.487483
Target:  5'- gCGcCGCUCGcgaaGCGGGCCCGCUUcgagcucgacaGCGCg -3'
miRNA:   3'- gGC-GCGGGC----CGUCCGGGCGGAa----------CGUG- -5'
6511 5' -65 NC_001847.1 + 84861 0.66 0.487483
Target:  5'- aCuaGCCCGGCuaggcGGCCCacguacgcGCCcaGCGCg -3'
miRNA:   3'- gGcgCGGGCCGu----CCGGG--------CGGaaCGUG- -5'
6511 5' -65 NC_001847.1 + 132799 0.66 0.487483
Target:  5'- gCCGgGCCggcgCGGCGGGagCCGCCgcUGCcCg -3'
miRNA:   3'- -GGCgCGG----GCCGUCCg-GGCGGa-ACGuG- -5'
6511 5' -65 NC_001847.1 + 5887 0.66 0.487483
Target:  5'- gCGCGCagGGC-GGCCgCGCCgucgcagauugUGCGCc -3'
miRNA:   3'- gGCGCGggCCGuCCGG-GCGGa----------ACGUG- -5'
6511 5' -65 NC_001847.1 + 80333 0.66 0.487483
Target:  5'- aCCGUGCCCGcGCucGCCaGCgcgGCGCg -3'
miRNA:   3'- -GGCGCGGGC-CGucCGGgCGgaaCGUG- -5'
6511 5' -65 NC_001847.1 + 43274 0.66 0.487483
Target:  5'- gCGCGUCCGGCGcuucGGCUU-CCUgaucGCGCa -3'
miRNA:   3'- gGCGCGGGCCGU----CCGGGcGGAa---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.