miRNA display CGI


Results 1 - 20 of 685 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6514 3' -71 NC_001847.1 + 29886 0.66 0.305397
Target:  5'- cCGCGGCggaGUGCCUgCCgCCCgaagugCGCCCgCCu -3'
miRNA:   3'- -GCGCCGgg-CGCGGA-GG-GGG------GCGGG-GG- -5'
6514 3' -71 NC_001847.1 + 115719 0.66 0.305397
Target:  5'- gCGCGGCCUuugGCGCUcCCgCUuuGCCUgCu -3'
miRNA:   3'- -GCGCCGGG---CGCGGaGG-GGggCGGGgG- -5'
6514 3' -71 NC_001847.1 + 10939 0.66 0.305397
Target:  5'- gGcCGGCCCGaauccCCUCCUUCCcCUCCCu -3'
miRNA:   3'- gC-GCCGGGCgc---GGAGGGGGGcGGGGG- -5'
6514 3' -71 NC_001847.1 + 10482 0.66 0.305397
Target:  5'- uGCaGGCCgagcUGgGCUUCCCCgaCGgCCCCg -3'
miRNA:   3'- gCG-CCGG----GCgCGGAGGGGg-GCgGGGG- -5'
6514 3' -71 NC_001847.1 + 25849 0.66 0.305397
Target:  5'- aCGCGucGCUCGCcaucuugcucGCCcCCCucgcuugcagCCCGCCCCUg -3'
miRNA:   3'- -GCGC--CGGGCG----------CGGaGGG----------GGGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 120906 0.66 0.305397
Target:  5'- aGCgGGCUCgGCGUUUgCCCUcaccaCGCCCCCn -3'
miRNA:   3'- gCG-CCGGG-CGCGGAgGGGG-----GCGGGGG- -5'
6514 3' -71 NC_001847.1 + 113943 0.66 0.305397
Target:  5'- uCGCGG-CgGCGUCUCCUa-CGCCgCCg -3'
miRNA:   3'- -GCGCCgGgCGCGGAGGGggGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 122241 0.66 0.305397
Target:  5'- gGCGGCacggcgCGCGCUUCCgCgUGCUgCCg -3'
miRNA:   3'- gCGCCGg-----GCGCGGAGGgGgGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 55933 0.66 0.305397
Target:  5'- cCGCGGCCgGCGUCgcgagCCCagaaugCGCaCCCg -3'
miRNA:   3'- -GCGCCGGgCGCGGa----GGGgg----GCGgGGG- -5'
6514 3' -71 NC_001847.1 + 29538 0.66 0.305397
Target:  5'- gCGCGGCgCGgGCgCUCgaguuCCCCCGCacggaCgCCg -3'
miRNA:   3'- -GCGCCGgGCgCG-GAG-----GGGGGCGg----G-GG- -5'
6514 3' -71 NC_001847.1 + 130959 0.66 0.305397
Target:  5'- gCGCGGCCCacgggcGCGCggCCCaaaacaaggCCCGCUCgCu -3'
miRNA:   3'- -GCGCCGGG------CGCGgaGGG---------GGGCGGGgG- -5'
6514 3' -71 NC_001847.1 + 57520 0.66 0.305397
Target:  5'- gGCGGCgCGcCGuCCUCgCCCagcggCGCCgCCa -3'
miRNA:   3'- gCGCCGgGC-GC-GGAGgGGG-----GCGGgGG- -5'
6514 3' -71 NC_001847.1 + 20197 0.66 0.305397
Target:  5'- cCGCgGGgCgGCGCC-CCgCCCCGCCa-- -3'
miRNA:   3'- -GCG-CCgGgCGCGGaGG-GGGGCGGggg -5'
6514 3' -71 NC_001847.1 + 17673 0.66 0.305397
Target:  5'- gGCGGCUCGCgguccGCCgggCaCCaCCGUCUCCg -3'
miRNA:   3'- gCGCCGGGCG-----CGGa--GgGG-GGCGGGGG- -5'
6514 3' -71 NC_001847.1 + 57226 0.66 0.305397
Target:  5'- cCGgGGCUCGuCGCCgagaggugCgCCaCCGCCgCCg -3'
miRNA:   3'- -GCgCCGGGC-GCGGa-------GgGG-GGCGGgGG- -5'
6514 3' -71 NC_001847.1 + 87409 0.66 0.305397
Target:  5'- gCGCGGgCgGgGCC-CCgCCCGCCgCg -3'
miRNA:   3'- -GCGCCgGgCgCGGaGGgGGGCGGgGg -5'
6514 3' -71 NC_001847.1 + 105641 0.66 0.303487
Target:  5'- uGCGGCCgaaGCGCCgCCCgCggccggagagcgugCCGCCUCg -3'
miRNA:   3'- gCGCCGGg--CGCGGaGGG-G--------------GGCGGGGg -5'
6514 3' -71 NC_001847.1 + 99096 0.66 0.303487
Target:  5'- aCGCGGCCgGCaGCCgcgcguagugcucgUCCgCgCGCagCCCCa -3'
miRNA:   3'- -GCGCCGGgCG-CGG--------------AGGgGgGCG--GGGG- -5'
6514 3' -71 NC_001847.1 + 102302 0.66 0.299065
Target:  5'- --gGGCCCgGCGUCguagUCCUCGCCCCa -3'
miRNA:   3'- gcgCCGGG-CGCGGag--GGGGGCGGGGg -5'
6514 3' -71 NC_001847.1 + 54606 0.66 0.299065
Target:  5'- gCGCGcGCCCGCGCCgaugCCgaCgUGCgCCg -3'
miRNA:   3'- -GCGC-CGGGCGCGGa---GGg-GgGCGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.