Results 21 - 40 of 425 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 133105 | 0.73 | 0.411804 |
Target: 5'- aCCCuauCGUG-GCCACgGCcgGCGCCGUGc -3' miRNA: 3'- -GGG---GCACaUGGUGgUGuaCGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 18701 | 0.74 | 0.378623 |
Target: 5'- gCCCGcGUcACCGCCA---GCGCCGCGg -3' miRNA: 3'- gGGGCaCA-UGGUGGUguaCGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 10384 | 0.75 | 0.325025 |
Target: 5'- cCCCCG-GUGCCGcCCGCGa--GCCGCGg -3' miRNA: 3'- -GGGGCaCAUGGU-GGUGUacgCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 75809 | 0.77 | 0.264704 |
Target: 5'- cCCCCGaugccgggcugGUACggCGCCGCcgGCGCCGCGc -3' miRNA: 3'- -GGGGCa----------CAUG--GUGGUGuaCGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 109400 | 0.71 | 0.511534 |
Target: 5'- -gCCGUGccGCCGCCGCccGcCGCCGCu -3' miRNA: 3'- ggGGCACa-UGGUGGUGuaC-GCGGCGc -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 44738 | 0.72 | 0.444049 |
Target: 5'- gCCUCGUGgcCCGCCACAaGCacguacggccggggGCCGUGg -3' miRNA: 3'- -GGGGCACauGGUGGUGUaCG--------------CGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 46257 | 0.74 | 0.362719 |
Target: 5'- cCCCCGgcggGaGCCGCCGCcgcCGCCGCGc -3' miRNA: 3'- -GGGGCa---CaUGGUGGUGuacGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 52584 | 0.77 | 0.258593 |
Target: 5'- gCUCCGUGUACCGCgCGCGgUGCGCUuCGg -3' miRNA: 3'- -GGGGCACAUGGUG-GUGU-ACGCGGcGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 127035 | 0.73 | 0.437839 |
Target: 5'- gCCCCGc--GCCugCGCugGCGCCGCGu -3' miRNA: 3'- -GGGGCacaUGGugGUGuaCGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 40746 | 0.77 | 0.246716 |
Target: 5'- gCCCCGUcgcgGUACUgcGCCGaauCGUGCGCCGCa -3' miRNA: 3'- -GGGGCA----CAUGG--UGGU---GUACGCGGCGc -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 116153 | 0.74 | 0.362719 |
Target: 5'- gCCCGaGgcgcugGCgGCCGCggGCGCCGCGg -3' miRNA: 3'- gGGGCaCa-----UGgUGGUGuaCGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 7097 | 0.73 | 0.420376 |
Target: 5'- aUCCCGUGUGCUugCA--UGCaaGCCGCa -3' miRNA: 3'- -GGGGCACAUGGugGUguACG--CGGCGc -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 3714 | 0.74 | 0.354942 |
Target: 5'- gCCCCGcg-GCCGCCGCGUaGCG-CGCGg -3' miRNA: 3'- -GGGGCacaUGGUGGUGUA-CGCgGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 68821 | 0.75 | 0.325025 |
Target: 5'- gCCCCac---CCGCCGCAggGCGCCGCGa -3' miRNA: 3'- -GGGGcacauGGUGGUGUa-CGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 65686 | 0.76 | 0.303845 |
Target: 5'- gCCCCGcc-GCCGCCGCGcgcGCGCCGCc -3' miRNA: 3'- -GGGGCacaUGGUGGUGUa--CGCGGCGc -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 83733 | 0.76 | 0.270932 |
Target: 5'- gCUCCGUcuGcGCCGCCGCAagguucgGCGCCGCGa -3' miRNA: 3'- -GGGGCA--CaUGGUGGUGUa------CGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 70687 | 0.71 | 0.526907 |
Target: 5'- cCCCCGc--GCCGCCGCGggcggcggcggggGCGCcCGCGg -3' miRNA: 3'- -GGGGCacaUGGUGGUGUa------------CGCG-GCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 43540 | 0.71 | 0.521121 |
Target: 5'- gCCgCGaGgagaagcGCCGCCGCGaGCGCCGCGa -3' miRNA: 3'- -GGgGCaCa------UGGUGGUGUaCGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 52077 | 0.72 | 0.464794 |
Target: 5'- -gCCGUGUugCGCUcuuCGgccGCGCCGCGg -3' miRNA: 3'- ggGGCACAugGUGGu--GUa--CGCGGCGC- -5' |
|||||||
6515 | 3' | -58.4 | NC_001847.1 | + | 31853 | 0.72 | 0.446726 |
Target: 5'- gCCCCGcc-GCCGCCGC-UGCuGCCGCc -3' miRNA: 3'- -GGGGCacaUGGUGGUGuACG-CGGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home