miRNA display CGI


Results 1 - 20 of 425 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 3' -58.4 NC_001847.1 + 88523 0.78 0.208678
Target:  5'- aCCUGUGcuUCACCACgcucGUGCGCCGCGa -3'
miRNA:   3'- gGGGCACauGGUGGUG----UACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 46257 0.74 0.362719
Target:  5'- cCCCCGgcggGaGCCGCCGCcgcCGCCGCGc -3'
miRNA:   3'- -GGGGCa---CaUGGUGGUGuacGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 18701 0.74 0.378623
Target:  5'- gCCCGcGUcACCGCCA---GCGCCGCGg -3'
miRNA:   3'- gGGGCaCA-UGGUGGUguaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 90719 0.66 0.828502
Target:  5'- cCCCCGUGcGCgaacgcaGCCGCucGCGgCGCGu -3'
miRNA:   3'- -GGGGCACaUGg------UGGUGuaCGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 83733 0.76 0.270932
Target:  5'- gCUCCGUcuGcGCCGCCGCAagguucgGCGCCGCGa -3'
miRNA:   3'- -GGGGCA--CaUGGUGGUGUa------CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 101013 0.76 0.290323
Target:  5'- gCCgCGgcgGCCACCGCGgcagGCGCCGCa -3'
miRNA:   3'- -GGgGCacaUGGUGGUGUa---CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 65686 0.76 0.303845
Target:  5'- gCCCCGcc-GCCGCCGCGcgcGCGCCGCc -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUa--CGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 30712 0.75 0.317845
Target:  5'- gCCgCG-GUGCUGCCGCggcgcaGUGCGCCGCGc -3'
miRNA:   3'- -GGgGCaCAUGGUGGUG------UACGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 68821 0.75 0.325025
Target:  5'- gCCCCac---CCGCCGCAggGCGCCGCGa -3'
miRNA:   3'- -GGGGcacauGGUGGUGUa-CGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 115715 0.74 0.362719
Target:  5'- gCCCGUGUgcgcuuGCCGCCACGggcGCGCUGg- -3'
miRNA:   3'- gGGGCACA------UGGUGGUGUa--CGCGGCgc -5'
6515 3' -58.4 NC_001847.1 + 102540 0.75 0.347284
Target:  5'- gCUCCGUGUcgGCCGCgACG-GCGgCCGCGa -3'
miRNA:   3'- -GGGGCACA--UGGUGgUGUaCGC-GGCGC- -5'
6515 3' -58.4 NC_001847.1 + 10384 0.75 0.325025
Target:  5'- cCCCCG-GUGCCGcCCGCGa--GCCGCGg -3'
miRNA:   3'- -GGGGCaCAUGGU-GGUGUacgCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 40746 0.77 0.246716
Target:  5'- gCCCCGUcgcgGUACUgcGCCGaauCGUGCGCCGCa -3'
miRNA:   3'- -GGGGCA----CAUGG--UGGU---GUACGCGGCGc -5'
6515 3' -58.4 NC_001847.1 + 3714 0.74 0.354942
Target:  5'- gCCCCGcg-GCCGCCGCGUaGCG-CGCGg -3'
miRNA:   3'- -GGGGCacaUGGUGGUGUA-CGCgGCGC- -5'
6515 3' -58.4 NC_001847.1 + 52584 0.77 0.258593
Target:  5'- gCUCCGUGUACCGCgCGCGgUGCGCUuCGg -3'
miRNA:   3'- -GGGGCACAUGGUG-GUGU-ACGCGGcGC- -5'
6515 3' -58.4 NC_001847.1 + 364 0.75 0.317845
Target:  5'- gCCCCGgGgcCCGCCcCGcGCGCCGCGc -3'
miRNA:   3'- -GGGGCaCauGGUGGuGUaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 107440 0.74 0.362719
Target:  5'- gCCCuUGcccCCGCCGCGUGCGCCgGCGc -3'
miRNA:   3'- gGGGcACau-GGUGGUGUACGCGG-CGC- -5'
6515 3' -58.4 NC_001847.1 + 116153 0.74 0.362719
Target:  5'- gCCCGaGgcgcugGCgGCCGCggGCGCCGCGg -3'
miRNA:   3'- gGGGCaCa-----UGgUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 75809 0.77 0.264704
Target:  5'- cCCCCGaugccgggcugGUACggCGCCGCcgGCGCCGCGc -3'
miRNA:   3'- -GGGGCa----------CAUG--GUGGUGuaCGCGGCGC- -5'
6515 3' -58.4 NC_001847.1 + 55924 0.76 0.297024
Target:  5'- gCCCGUGauCCGCgGCcgGCGUCGCGa -3'
miRNA:   3'- gGGGCACauGGUGgUGuaCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.