miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 5' -51 NC_001847.1 + 23521 0.66 0.992846
Target:  5'- gCACACgaggucgcCGCCCGUGaagACgccgUUGUUGGu -3'
miRNA:   3'- -GUGUGau------GUGGGCACg--UGa---AGCAACC- -5'
6515 5' -51 NC_001847.1 + 30145 0.66 0.991768
Target:  5'- aCGCGCgGCGCgCCGUGCGCccugggugCG-UGGc -3'
miRNA:   3'- -GUGUGaUGUG-GGCACGUGaa------GCaACC- -5'
6515 5' -51 NC_001847.1 + 104050 0.66 0.991768
Target:  5'- cCGCGCUGCccgGCCCcaGCGCcgcgUCGUacUGGu -3'
miRNA:   3'- -GUGUGAUG---UGGGcaCGUGa---AGCA--ACC- -5'
6515 5' -51 NC_001847.1 + 94683 0.66 0.991062
Target:  5'- gACGCuUAUGCCCGUGCcgcgcaaguacuggcGCUUCagcagcgaGUUGGc -3'
miRNA:   3'- gUGUG-AUGUGGGCACG---------------UGAAG--------CAACC- -5'
6515 5' -51 NC_001847.1 + 39808 0.66 0.990566
Target:  5'- cCugGCUGCGCCCccUGCGcCUUCGg--- -3'
miRNA:   3'- -GugUGAUGUGGGc-ACGU-GAAGCaacc -5'
6515 5' -51 NC_001847.1 + 28665 0.66 0.990566
Target:  5'- gCGCGCUcgucGCACgaCGUGCGCguaUCGgcGGc -3'
miRNA:   3'- -GUGUGA----UGUGg-GCACGUGa--AGCaaCC- -5'
6515 5' -51 NC_001847.1 + 24795 0.66 0.989229
Target:  5'- cCACACaACGCCCucgcgGC-CUUCGaggUGGg -3'
miRNA:   3'- -GUGUGaUGUGGGca---CGuGAAGCa--ACC- -5'
6515 5' -51 NC_001847.1 + 3742 0.66 0.989229
Target:  5'- gCGCAC-GCGgCCGUGCagcGCUUCGUc-- -3'
miRNA:   3'- -GUGUGaUGUgGGCACG---UGAAGCAacc -5'
6515 5' -51 NC_001847.1 + 59664 0.66 0.989229
Target:  5'- uCGCGCc-CGCCCGUGCGCUc---UGGc -3'
miRNA:   3'- -GUGUGauGUGGGCACGUGAagcaACC- -5'
6515 5' -51 NC_001847.1 + 72162 0.66 0.989229
Target:  5'- uGCACUACgACCgCGUGUACc-CGcUGGu -3'
miRNA:   3'- gUGUGAUG-UGG-GCACGUGaaGCaACC- -5'
6515 5' -51 NC_001847.1 + 57367 0.66 0.989229
Target:  5'- cCGCGCUGgGCCUcccGCACgUCGUagUGGa -3'
miRNA:   3'- -GUGUGAUgUGGGca-CGUGaAGCA--ACC- -5'
6515 5' -51 NC_001847.1 + 60820 0.66 0.989088
Target:  5'- aCACACUgauggcgcgagggGCGCCCGcgGCGCUgcgCGgcgccaGGg -3'
miRNA:   3'- -GUGUGA-------------UGUGGGCa-CGUGAa--GCaa----CC- -5'
6515 5' -51 NC_001847.1 + 134178 0.66 0.98775
Target:  5'- gGCGCauagACGCCCG-GCGCagCGU-GGa -3'
miRNA:   3'- gUGUGa---UGUGGGCaCGUGaaGCAaCC- -5'
6515 5' -51 NC_001847.1 + 66301 0.67 0.986118
Target:  5'- cCGCGCUcGCGCCCGaGCuCUUCGc-GGc -3'
miRNA:   3'- -GUGUGA-UGUGGGCaCGuGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 95142 0.67 0.986118
Target:  5'- gGCGCUGCGCuuGggggugccgGCAUggCGggGGg -3'
miRNA:   3'- gUGUGAUGUGggCa--------CGUGaaGCaaCC- -5'
6515 5' -51 NC_001847.1 + 10068 0.67 0.986118
Target:  5'- gCGCGCUGCG-CCGcGCGCU-CGUcGGc -3'
miRNA:   3'- -GUGUGAUGUgGGCaCGUGAaGCAaCC- -5'
6515 5' -51 NC_001847.1 + 112881 0.67 0.986118
Target:  5'- gCGCGCUGCG-CCGcGCGCU-CGUcGGc -3'
miRNA:   3'- -GUGUGAUGUgGGCaCGUGAaGCAaCC- -5'
6515 5' -51 NC_001847.1 + 58856 0.67 0.984511
Target:  5'- gGCGCUGCGUCCGcGCGCcaggcaguguuagucUCGUUGGc -3'
miRNA:   3'- gUGUGAUGUGGGCaCGUGa--------------AGCAACC- -5'
6515 5' -51 NC_001847.1 + 86259 0.67 0.984324
Target:  5'- gGCACUGCGCCCccGCGCgc---UGGg -3'
miRNA:   3'- gUGUGAUGUGGGcaCGUGaagcaACC- -5'
6515 5' -51 NC_001847.1 + 50528 0.67 0.984324
Target:  5'- uCGCGCUGgacCACCUG-GCGCUggCGUgcgGGu -3'
miRNA:   3'- -GUGUGAU---GUGGGCaCGUGAa-GCAa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.