miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6515 5' -51 NC_001847.1 + 28525 0.7 0.90959
Target:  5'- gCGCGCcGCcgccgcccgGCCgCGUGCGCUUCGgcGGc -3'
miRNA:   3'- -GUGUGaUG---------UGG-GCACGUGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 134178 0.66 0.98775
Target:  5'- gGCGCauagACGCCCG-GCGCagCGU-GGa -3'
miRNA:   3'- gUGUGa---UGUGGGCaCGUGaaGCAaCC- -5'
6515 5' -51 NC_001847.1 + 58856 0.67 0.984511
Target:  5'- gGCGCUGCGUCCGcGCGCcaggcaguguuagucUCGUUGGc -3'
miRNA:   3'- gUGUGAUGUGGGCaCGUGa--------------AGCAACC- -5'
6515 5' -51 NC_001847.1 + 86259 0.67 0.984324
Target:  5'- gGCACUGCGCCCccGCGCgc---UGGg -3'
miRNA:   3'- gUGUGAUGUGGGcaCGUGaagcaACC- -5'
6515 5' -51 NC_001847.1 + 52580 0.67 0.98236
Target:  5'- aCGCGCUccguguaccGCGCgCgGUGCGCUUCGg--- -3'
miRNA:   3'- -GUGUGA---------UGUG-GgCACGUGAAGCaacc -5'
6515 5' -51 NC_001847.1 + 49618 0.67 0.98236
Target:  5'- gCGCGCgcCACCCG-GCGCUguuuUUGGa -3'
miRNA:   3'- -GUGUGauGUGGGCaCGUGAagc-AACC- -5'
6515 5' -51 NC_001847.1 + 94683 0.66 0.991062
Target:  5'- gACGCuUAUGCCCGUGCcgcgcaaguacuggcGCUUCagcagcgaGUUGGc -3'
miRNA:   3'- gUGUG-AUGUGGGCACG---------------UGAAG--------CAACC- -5'
6515 5' -51 NC_001847.1 + 10068 0.67 0.986118
Target:  5'- gCGCGCUGCG-CCGcGCGCU-CGUcGGc -3'
miRNA:   3'- -GUGUGAUGUgGGCaCGUGAaGCAaCC- -5'
6515 5' -51 NC_001847.1 + 60528 0.67 0.98236
Target:  5'- gGCGCUGC-CCagcUGCACgauggCGUUGGc -3'
miRNA:   3'- gUGUGAUGuGGgc-ACGUGaa---GCAACC- -5'
6515 5' -51 NC_001847.1 + 49808 0.67 0.977883
Target:  5'- uGCGCUGCugCUGggcGCGCUggCGgccUGGa -3'
miRNA:   3'- gUGUGAUGugGGCa--CGUGAa-GCa--ACC- -5'
6515 5' -51 NC_001847.1 + 131405 0.68 0.963115
Target:  5'- aGCGCUGCacgGCCgCGUGCGCgcCG-UGGc -3'
miRNA:   3'- gUGUGAUG---UGG-GCACGUGaaGCaACC- -5'
6515 5' -51 NC_001847.1 + 104050 0.66 0.991768
Target:  5'- cCGCGCUGCccgGCCCcaGCGCcgcgUCGUacUGGu -3'
miRNA:   3'- -GUGUGAUG---UGGGcaCGUGa---AGCA--ACC- -5'
6515 5' -51 NC_001847.1 + 47919 0.68 0.97262
Target:  5'- aGCGCUGCGCa---GCGCUUCcaGUUGGa -3'
miRNA:   3'- gUGUGAUGUGggcaCGUGAAG--CAACC- -5'
6515 5' -51 NC_001847.1 + 95142 0.67 0.986118
Target:  5'- gGCGCUGCGCuuGggggugccgGCAUggCGggGGg -3'
miRNA:   3'- gUGUGAUGUGggCa--------CGUGaaGCaaCC- -5'
6515 5' -51 NC_001847.1 + 57367 0.66 0.989229
Target:  5'- cCGCGCUGgGCCUcccGCACgUCGUagUGGa -3'
miRNA:   3'- -GUGUGAUgUGGGca-CGUGaAGCA--ACC- -5'
6515 5' -51 NC_001847.1 + 90028 0.68 0.975354
Target:  5'- --aGCUGCACC--UGCGCUUCGagGGc -3'
miRNA:   3'- gugUGAUGUGGgcACGUGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 37715 0.68 0.975354
Target:  5'- gCGCGCUGCugCUGgGCGCgccgguugUCGUggccaUGGa -3'
miRNA:   3'- -GUGUGAUGugGGCaCGUGa-------AGCA-----ACC- -5'
6515 5' -51 NC_001847.1 + 33765 0.69 0.955626
Target:  5'- aCGCGCUguuGCugCCGcUGCaggGCUUCGcgGGg -3'
miRNA:   3'- -GUGUGA---UGugGGC-ACG---UGAAGCaaCC- -5'
6515 5' -51 NC_001847.1 + 49923 0.69 0.951521
Target:  5'- gGCGCUGCGC--GUGCGCa-CGUUGGa -3'
miRNA:   3'- gUGUGAUGUGggCACGUGaaGCAACC- -5'
6515 5' -51 NC_001847.1 + 82595 0.7 0.921029
Target:  5'- aGCGCUcgcggcgGCGCCUGUGCGCcgcgCGcUGGa -3'
miRNA:   3'- gUGUGA-------UGUGGGCACGUGaa--GCaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.