miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6516 5' -55.7 NC_001847.1 + 123306 0.66 0.873979
Target:  5'- gGCGGCGccaGAGGCCuUACGCcagagggagGCCUCg -3'
miRNA:   3'- aUGUCGUcg-CUCUGG-AUGUGa--------CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 15246 0.66 0.873979
Target:  5'- gGCGGCGGCGGcGGCCacGCACgcgaucGCCg- -3'
miRNA:   3'- aUGUCGUCGCU-CUGGa-UGUGa-----CGGag -5'
6516 5' -55.7 NC_001847.1 + 2104 0.66 0.873979
Target:  5'- cGCGGCGGCG-GGCCgcgaucucgGCcaGC-GCCUCg -3'
miRNA:   3'- aUGUCGUCGCuCUGGa--------UG--UGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 73239 0.66 0.873979
Target:  5'- gGCGGCGGCgcgggcgcgcucGAGGCCgUGCGCgcacGCCg- -3'
miRNA:   3'- aUGUCGUCG------------CUCUGG-AUGUGa---CGGag -5'
6516 5' -55.7 NC_001847.1 + 119110 0.66 0.873979
Target:  5'- cGgGGCGGCGGGGCagGCAUgggGCCgUCg -3'
miRNA:   3'- aUgUCGUCGCUCUGgaUGUGa--CGG-AG- -5'
6516 5' -55.7 NC_001847.1 + 104917 0.66 0.873979
Target:  5'- cGCGGCGGCG-GGCCgcgaucucgGCcaGC-GCCUCg -3'
miRNA:   3'- aUGUCGUCGCuCUGGa--------UG--UGaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 59810 0.66 0.873979
Target:  5'- cACGGCGGuCGAGAgcagcgUUUGCGCcagcGCCUCg -3'
miRNA:   3'- aUGUCGUC-GCUCU------GGAUGUGa---CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 128191 0.66 0.873979
Target:  5'- gGCGGCGGCagggcggaggGGGACCgcggaaGCACUGCg-- -3'
miRNA:   3'- aUGUCGUCG----------CUCUGGa-----UGUGACGgag -5'
6516 5' -55.7 NC_001847.1 + 50070 0.66 0.873979
Target:  5'- cGCGcGCGGCGcGGACCcggGCGCgGCCa- -3'
miRNA:   3'- aUGU-CGUCGC-UCUGGa--UGUGaCGGag -5'
6516 5' -55.7 NC_001847.1 + 25378 0.66 0.873979
Target:  5'- gGCGGCGGCagggcggaggGGGACCgcggaaGCACUGCg-- -3'
miRNA:   3'- aUGUCGUCG----------CUCUGGa-----UGUGACGgag -5'
6516 5' -55.7 NC_001847.1 + 53251 0.66 0.873979
Target:  5'- cUGCGGCgccgccucGGCGGGGCgCUGCGC-GCC-Ca -3'
miRNA:   3'- -AUGUCG--------UCGCUCUG-GAUGUGaCGGaG- -5'
6516 5' -55.7 NC_001847.1 + 119230 0.66 0.873979
Target:  5'- cGgGGCGGCGGGGCagGCAUgggGCCgUCg -3'
miRNA:   3'- aUgUCGUCGCUCUGgaUGUGa--CGG-AG- -5'
6516 5' -55.7 NC_001847.1 + 127359 0.66 0.873979
Target:  5'- aGgGGCGGCGGGGCC--CGa-GCCUCg -3'
miRNA:   3'- aUgUCGUCGCUCUGGauGUgaCGGAG- -5'
6516 5' -55.7 NC_001847.1 + 30828 0.66 0.86944
Target:  5'- cACGGCGGCGGGGCCgugGCuuacgacggaagacCUGCUc- -3'
miRNA:   3'- aUGUCGUCGCUCUGGa--UGu-------------GACGGag -5'
6516 5' -55.7 NC_001847.1 + 14418 0.66 0.866369
Target:  5'- cGCucGCAGCGGG-UCgcgACUGCCUCg -3'
miRNA:   3'- aUGu-CGUCGCUCuGGaugUGACGGAG- -5'
6516 5' -55.7 NC_001847.1 + 20847 0.66 0.866369
Target:  5'- cGCGGUcgcaaAGCGAG-UCUGCGCUGCg-- -3'
miRNA:   3'- aUGUCG-----UCGCUCuGGAUGUGACGgag -5'
6516 5' -55.7 NC_001847.1 + 123498 0.66 0.866369
Target:  5'- cGCcGCaAGCGGGGCCgggGCcaggGCUGCCg- -3'
miRNA:   3'- aUGuCG-UCGCUCUGGa--UG----UGACGGag -5'
6516 5' -55.7 NC_001847.1 + 52588 0.66 0.866369
Target:  5'- gGCGGCGGcCGAGGCCgagccCGCgggcggcGCCUUu -3'
miRNA:   3'- aUGUCGUC-GCUCUGGau---GUGa------CGGAG- -5'
6516 5' -55.7 NC_001847.1 + 100559 0.66 0.866369
Target:  5'- gGCcGCGGCGAuuauuGCCgccagGCGCUGCCg- -3'
miRNA:   3'- aUGuCGUCGCUc----UGGa----UGUGACGGag -5'
6516 5' -55.7 NC_001847.1 + 81364 0.66 0.865595
Target:  5'- cGCGGCGGCugcGGugCUGCcgcccucGCcGCCUCg -3'
miRNA:   3'- aUGUCGUCGc--UCugGAUG-------UGaCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.