miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6518 3' -60.9 NC_001847.1 + 44600 0.66 0.694445
Target:  5'- -cGCGcGGCGAGGGcCGCCagggCGcCGUUc -3'
miRNA:   3'- cuCGC-UCGCUCCC-GCGGa---GCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 112057 0.66 0.694445
Target:  5'- -cGCGGGCuacguaGAGGGCGCcCUCGgCGa-- -3'
miRNA:   3'- cuCGCUCG------CUCCCGCG-GAGCaGCaga -5'
6518 3' -60.9 NC_001847.1 + 70871 0.66 0.694445
Target:  5'- cGAGCGAGCGcaGGGGCaGCUUUauaGUCc -3'
miRNA:   3'- -CUCGCUCGC--UCCCG-CGGAGcagCAGa -5'
6518 3' -60.9 NC_001847.1 + 96480 0.66 0.694445
Target:  5'- uGAGCuugcGCGAGGGCuCCguguUCGUUGUCc -3'
miRNA:   3'- -CUCGcu--CGCUCCCGcGG----AGCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 67462 0.66 0.694445
Target:  5'- cAGCGcGCGcGcGGCgGCCgcggCGUCGUCg -3'
miRNA:   3'- cUCGCuCGCuC-CCG-CGGa---GCAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 73550 0.66 0.68459
Target:  5'- aGGUGGGCGcGGGCGUgUCGcggagcaCGUCg -3'
miRNA:   3'- cUCGCUCGCuCCCGCGgAGCa------GCAGa -5'
6518 3' -60.9 NC_001847.1 + 50598 0.66 0.674693
Target:  5'- gGAGCGcuGCGAcgcGGGCGCCUuCGcCGg-- -3'
miRNA:   3'- -CUCGCu-CGCU---CCCGCGGA-GCaGCaga -5'
6518 3' -60.9 NC_001847.1 + 81818 0.66 0.674693
Target:  5'- aGGCG-GCGGGGcGCGCCgucUGUCGcCc -3'
miRNA:   3'- cUCGCuCGCUCC-CGCGGa--GCAGCaGa -5'
6518 3' -60.9 NC_001847.1 + 3970 0.66 0.664764
Target:  5'- cGGCG-GCGAGGGCGCCgggggcCGggCG-Cg -3'
miRNA:   3'- cUCGCuCGCUCCCGCGGa-----GCa-GCaGa -5'
6518 3' -60.9 NC_001847.1 + 77468 0.66 0.65481
Target:  5'- gGGGCGGGCGccGGGCGCC-CGgccCGg-- -3'
miRNA:   3'- -CUCGCUCGCu-CCCGCGGaGCa--GCaga -5'
6518 3' -60.9 NC_001847.1 + 123738 0.66 0.65481
Target:  5'- cGGCGA-CGGGGGCcgaacaugGCCUCuggaGUCGUCc -3'
miRNA:   3'- cUCGCUcGCUCCCG--------CGGAG----CAGCAGa -5'
6518 3' -60.9 NC_001847.1 + 12346 0.66 0.65481
Target:  5'- uGGUGAGCGGuGGGCcuGgCUCGggagCGUCg -3'
miRNA:   3'- cUCGCUCGCU-CCCG--CgGAGCa---GCAGa -5'
6518 3' -60.9 NC_001847.1 + 105341 0.66 0.65481
Target:  5'- -cGUGGGCGccGGGGCGC-UCG-CGUCc -3'
miRNA:   3'- cuCGCUCGC--UCCCGCGgAGCaGCAGa -5'
6518 3' -60.9 NC_001847.1 + 122566 0.66 0.65481
Target:  5'- cGAGU--GCGAGGGCGCCgCGUaCG-Cg -3'
miRNA:   3'- -CUCGcuCGCUCCCGCGGaGCA-GCaGa -5'
6518 3' -60.9 NC_001847.1 + 122539 0.66 0.644838
Target:  5'- uGAG-GAGCGGGGGCccuuccgacaGCCgcUCGUCGcgcUCUa -3'
miRNA:   3'- -CUCgCUCGCUCCCG----------CGG--AGCAGC---AGA- -5'
6518 3' -60.9 NC_001847.1 + 14230 0.66 0.64384
Target:  5'- gGGGCGuGGUGAGGGCaaacgccgagcccGCuCUCGUCG-Cg -3'
miRNA:   3'- -CUCGC-UCGCUCCCG-------------CG-GAGCAGCaGa -5'
6518 3' -60.9 NC_001847.1 + 102690 0.67 0.614896
Target:  5'- gGGGCGGGgGcAGGGCGCCgggCGggCGg-- -3'
miRNA:   3'- -CUCGCUCgC-UCCCGCGGa--GCa-GCaga -5'
6518 3' -60.9 NC_001847.1 + 59928 0.67 0.614896
Target:  5'- aGAGCcGGCGgaAGGGCGCCaCGcaagCGUCc -3'
miRNA:   3'- -CUCGcUCGC--UCCCGCGGaGCa---GCAGa -5'
6518 3' -60.9 NC_001847.1 + 132376 0.67 0.614896
Target:  5'- -cGCcGGCGGGGGCGCCggCGcCGg-- -3'
miRNA:   3'- cuCGcUCGCUCCCGCGGa-GCaGCaga -5'
6518 3' -60.9 NC_001847.1 + 29563 0.67 0.614896
Target:  5'- -cGCcGGCGGGGGCGCCggCGcCGg-- -3'
miRNA:   3'- cuCGcUCGCUCCCGCGGa-GCaGCaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.