miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
652 5' -52.6 AC_000017.1 + 6553 0.66 0.733934
Target:  5'- aAGGGCGGCcgccucugcuggaccAACgAGCGCCuacgcggaGAGGUaGCCa -3'
miRNA:   3'- -UCUCGUUG---------------UUG-UCGCGG--------UUCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 16287 0.66 0.733934
Target:  5'- cAGGGCcgccgccgcgcguugGGCGGCAGUGCCGGgucGGCgGCg -3'
miRNA:   3'- -UCUCG---------------UUGUUGUCGCGGUU---CCGaUGg -5'
652 5' -52.6 AC_000017.1 + 17676 0.66 0.729444
Target:  5'- uGGGGUggUAgcgcgcuguugGCAGCaCCAGGGUccUGCCu -3'
miRNA:   3'- -UCUCGuuGU-----------UGUCGcGGUUCCG--AUGG- -5'
652 5' -52.6 AC_000017.1 + 856 0.66 0.729444
Target:  5'- cGAGCAGCcggAGCAGagaGCCuuGGGUccgguuucuaUGCCa -3'
miRNA:   3'- uCUCGUUG---UUGUCg--CGGu-UCCG----------AUGG- -5'
652 5' -52.6 AC_000017.1 + 27975 0.66 0.729444
Target:  5'- -uGGCGGCGGCAGUGgUCAAGGUg--- -3'
miRNA:   3'- ucUCGUUGUUGUCGC-GGUUCCGaugg -5'
652 5' -52.6 AC_000017.1 + 16349 0.66 0.706745
Target:  5'- cGAGCGgccgccGCAGCAGCcgcgGCCAuuAGuGCUAUg -3'
miRNA:   3'- uCUCGU------UGUUGUCG----CGGU--UC-CGAUGg -5'
652 5' -52.6 AC_000017.1 + 12778 0.66 0.706745
Target:  5'- uAGuGCAACcAUGGaGCCcAGGUUGCCc -3'
miRNA:   3'- -UCuCGUUGuUGUCgCGGuUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 15602 0.66 0.695264
Target:  5'- cGGGCAACAGCucGGCGCCcaccaccggAAaGUUGCUg -3'
miRNA:   3'- uCUCGUUGUUG--UCGCGG---------UUcCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 24391 0.66 0.695264
Target:  5'- -aAGCAucuGCAGCGCCAGuGcGCUAUUa -3'
miRNA:   3'- ucUCGUuguUGUCGCGGUU-C-CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 11275 0.66 0.694112
Target:  5'- uGAGCGACAcccaaggguGCAGCugaagcgugacacGCgCGAGGCguacgUGCCg -3'
miRNA:   3'- uCUCGUUGU---------UGUCG-------------CG-GUUCCG-----AUGG- -5'
652 5' -52.6 AC_000017.1 + 33344 0.66 0.690652
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
652 5' -52.6 AC_000017.1 + 23955 0.66 0.683715
Target:  5'- -cGGCGGCGACGGCGaCGGGGacgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCgGUUCCga-UGg -5'
652 5' -52.6 AC_000017.1 + 16521 0.66 0.683715
Target:  5'- -cAGCGGCGGCGGCGCgCAucgaaGCUAUg -3'
miRNA:   3'- ucUCGUUGUUGUCGCG-GUuc---CGAUGg -5'
652 5' -52.6 AC_000017.1 + 10845 0.66 0.683715
Target:  5'- uAGcGCAGCAGCcgccGCGCCuggAAGGaaGCCa -3'
miRNA:   3'- -UCuCGUUGUUGu---CGCGG---UUCCgaUGG- -5'
652 5' -52.6 AC_000017.1 + 22192 0.67 0.67211
Target:  5'- uGGAGaaacauGCAGCAGaauagGCCAcAGGCgGCCg -3'
miRNA:   3'- -UCUCgu----UGUUGUCg----CGGU-UCCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 5471 0.67 0.67211
Target:  5'- cAGGGCGAagacCGGCAGCGCUucaGC-ACCa -3'
miRNA:   3'- -UCUCGUU----GUUGUCGCGGuucCGaUGG- -5'
652 5' -52.6 AC_000017.1 + 23403 0.67 0.67211
Target:  5'- -aGGUcuuACAuACGGcCGCCAGGGCUuCCa -3'
miRNA:   3'- ucUCGu--UGU-UGUC-GCGGUUCCGAuGG- -5'
652 5' -52.6 AC_000017.1 + 6116 0.67 0.67211
Target:  5'- cGGGCAugAcuuCuGCGCUAAGGUUGUCa -3'
miRNA:   3'- uCUCGUugUu--GuCGCGGUUCCGAUGG- -5'
652 5' -52.6 AC_000017.1 + 9487 0.67 0.66862
Target:  5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3'
miRNA:   3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5'
652 5' -52.6 AC_000017.1 + 33229 0.67 0.660463
Target:  5'- uGAGCAACcgcaaguugGACAGCaGCCuguGGCUcaGCa -3'
miRNA:   3'- uCUCGUUG---------UUGUCG-CGGuu-CCGA--UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.