miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6527 5' -62.7 NC_001847.1 + 130850 0.83 0.054051
Target:  5'- cGCGAGuaccaaggcGCCGgcgCGCGcCUCGUGGCCGCc -3'
miRNA:   3'- aCGCUC---------CGGCa--GCGC-GAGCACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 27936 0.75 0.177073
Target:  5'- cGCGgacaggccuGGGCCGcggcgcgCGCGCUCGcGGUCGCg -3'
miRNA:   3'- aCGC---------UCCGGCa------GCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 101824 0.75 0.181401
Target:  5'- cGCGAGGCCGUCuucgguguGCGC-CGUugcgccuGCCGCg -3'
miRNA:   3'- aCGCUCCGGCAG--------CGCGaGCAc------CGGCG- -5'
6527 5' -62.7 NC_001847.1 + 44840 0.66 0.619833
Target:  5'- -aUGGGcGCgGUCGCGCUCcaaaaacgcacGUcGCCGCg -3'
miRNA:   3'- acGCUC-CGgCAGCGCGAG-----------CAcCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 2093 0.79 0.102656
Target:  5'- cGCGGGGCC--CGCGCggCGgcgGGCCGCg -3'
miRNA:   3'- aCGCUCCGGcaGCGCGa-GCa--CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 28605 0.78 0.105282
Target:  5'- cGCGAGGCgGcCGCGCgcuacgCGgcGGCCGCg -3'
miRNA:   3'- aCGCUCCGgCaGCGCGa-----GCa-CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 73239 0.77 0.125504
Target:  5'- gGCGGcGGCgCGggCGCGCUCGaGGCCGUg -3'
miRNA:   3'- aCGCU-CCG-GCa-GCGCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 120929 0.77 0.128671
Target:  5'- gGCGGGGCgGgCGCGCgggCGUGGUgGCu -3'
miRNA:   3'- aCGCUCCGgCaGCGCGa--GCACCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 69693 0.76 0.145643
Target:  5'- cGCGGGGCCG--GCGCUCGguccgcGGCgCGCg -3'
miRNA:   3'- aCGCUCCGGCagCGCGAGCa-----CCG-GCG- -5'
6527 5' -62.7 NC_001847.1 + 119125 0.76 0.164635
Target:  5'- gGCauGGGGCCGUCGauggcgaGCUCGUcggcgccgcGGCCGCc -3'
miRNA:   3'- aCG--CUCCGGCAGCg------CGAGCA---------CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 80581 0.76 0.152988
Target:  5'- cGCGGGGCCGUCGUcCUCcgcGCCGCc -3'
miRNA:   3'- aCGCUCCGGCAGCGcGAGcacCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 55029 0.77 0.135229
Target:  5'- cGCGucGGGCgCGuUUGCGCagGUGGCCGCg -3'
miRNA:   3'- aCGC--UCCG-GC-AGCGCGagCACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 130626 0.8 0.083767
Target:  5'- cGCGAGGCaCGUCGUGCgcaCGuUGGCgGCg -3'
miRNA:   3'- aCGCUCCG-GCAGCGCGa--GC-ACCGgCG- -5'
6527 5' -62.7 NC_001847.1 + 28345 0.76 0.152988
Target:  5'- cGCGGGGCCG-CGCGCcCG-GGCCcccgGCg -3'
miRNA:   3'- aCGCUCCGGCaGCGCGaGCaCCGG----CG- -5'
6527 5' -62.7 NC_001847.1 + 81244 0.79 0.095143
Target:  5'- gGCGGGGCCGUCGCGaggaCGgggGGcCCGCc -3'
miRNA:   3'- aCGCUCCGGCAGCGCga--GCa--CC-GGCG- -5'
6527 5' -62.7 NC_001847.1 + 111297 0.77 0.128671
Target:  5'- cGCGAGGCCaGcCG-GCUCGgGGCCGUg -3'
miRNA:   3'- aCGCUCCGG-CaGCgCGAGCaCCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 117405 0.76 0.160667
Target:  5'- cGCGAGGCCGUgGcCGcCUCGUacgccGaGCCGCu -3'
miRNA:   3'- aCGCUCCGGCAgC-GC-GAGCA-----C-CGGCG- -5'
6527 5' -62.7 NC_001847.1 + 132019 0.75 0.177073
Target:  5'- cGCGGGGCUGcUCguaaagGCGCUCuaccUGGCCGCu -3'
miRNA:   3'- aCGCUCCGGC-AG------CGCGAGc---ACCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 123468 0.79 0.095143
Target:  5'- gGCGAcGGCCGcCGCggGCUCGgcuggGGCCGCc -3'
miRNA:   3'- aCGCU-CCGGCaGCG--CGAGCa----CCGGCG- -5'
6527 5' -62.7 NC_001847.1 + 120405 0.78 0.113544
Target:  5'- cGCGAGGCCcggCGCGCguaUGUGGgCGCa -3'
miRNA:   3'- aCGCUCCGGca-GCGCGa--GCACCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.