miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6530 3' -55.5 NC_001847.1 + 75536 0.66 0.916974
Target:  5'- gUCUgcaUUGCGCuucccGUCGCgggcGGACGCGc -3'
miRNA:   3'- -AGA---AGCGCGucua-CAGCGa---CCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 52524 0.66 0.916974
Target:  5'- ---cCGCGCggcccgggGGAUgGUCGCcggaGGGCGCGg -3'
miRNA:   3'- agaaGCGCG--------UCUA-CAGCGa---CCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 29684 0.66 0.916974
Target:  5'- --gUgGCGCAGcUGauggcgcugaUCGCuUGGGCGCGa -3'
miRNA:   3'- agaAgCGCGUCuAC----------AGCG-ACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 89015 0.66 0.913454
Target:  5'- -gUUCGCGgGGAugcccuacgacgccgUGUgcgCGCUGGGCGaCGg -3'
miRNA:   3'- agAAGCGCgUCU---------------ACA---GCGACCUGC-GC- -5'
6530 3' -55.5 NC_001847.1 + 85844 0.66 0.911059
Target:  5'- ---aUGCGUcGAgcgcGUCGCUGG-CGCGg -3'
miRNA:   3'- agaaGCGCGuCUa---CAGCGACCuGCGC- -5'
6530 3' -55.5 NC_001847.1 + 132827 0.66 0.911059
Target:  5'- ---cCGCGCAGcgggcGUGUCGCcaUGGGCaGCc -3'
miRNA:   3'- agaaGCGCGUC-----UACAGCG--ACCUG-CGc -5'
6530 3' -55.5 NC_001847.1 + 102986 0.66 0.911059
Target:  5'- ---cCGCGCAcGccGUCGCggcgugcgcGGGCGCGg -3'
miRNA:   3'- agaaGCGCGU-CuaCAGCGa--------CCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 33525 0.66 0.911059
Target:  5'- ---cCGcCGCGGAgg-CGCcGGGCGCGg -3'
miRNA:   3'- agaaGC-GCGUCUacaGCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 44924 0.66 0.904903
Target:  5'- ---cCGCGaccGUGUCGCUgGGGCGCu -3'
miRNA:   3'- agaaGCGCgucUACAGCGA-CCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 27957 0.66 0.904903
Target:  5'- gCgcgCGCGCucGcgGUCGCggUGGAgGCGg -3'
miRNA:   3'- aGaa-GCGCGu-CuaCAGCG--ACCUgCGC- -5'
6530 3' -55.5 NC_001847.1 + 130770 0.66 0.904903
Target:  5'- gCgcgCGCGCucGcgGUCGCggUGGAgGCGg -3'
miRNA:   3'- aGaa-GCGCGu-CuaCAGCG--ACCUgCGC- -5'
6530 3' -55.5 NC_001847.1 + 14566 0.66 0.904903
Target:  5'- ----aGCGCGGGUGcUgGC-GGGCGCGc -3'
miRNA:   3'- agaagCGCGUCUAC-AgCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 31157 0.66 0.901096
Target:  5'- cCUUCGCggGCGGcgucgacgccgCGCUGGGCGCc -3'
miRNA:   3'- aGAAGCG--CGUCuaca-------GCGACCUGCGc -5'
6530 3' -55.5 NC_001847.1 + 34007 0.66 0.89851
Target:  5'- cCUUCGCgGCGGugcUGggcaccgCGCUGGGCcagGCGa -3'
miRNA:   3'- aGAAGCG-CGUCu--ACa------GCGACCUG---CGC- -5'
6530 3' -55.5 NC_001847.1 + 69671 0.66 0.89851
Target:  5'- ---aCGCGUGGuagGcagCGUUGGGCGCGg -3'
miRNA:   3'- agaaGCGCGUCua-Ca--GCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 64081 0.66 0.89851
Target:  5'- --cUCGcCGCccucgAGGUGUucgUGCUGGACGUGu -3'
miRNA:   3'- agaAGC-GCG-----UCUACA---GCGACCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 103387 0.66 0.89851
Target:  5'- ---gCGCGCGGGUGcaCGCUGaccACGCGc -3'
miRNA:   3'- agaaGCGCGUCUACa-GCGACc--UGCGC- -5'
6530 3' -55.5 NC_001847.1 + 7729 0.66 0.89851
Target:  5'- ----gGCGCAGGg--CGC-GGGCGCGg -3'
miRNA:   3'- agaagCGCGUCUacaGCGaCCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 77710 0.66 0.891882
Target:  5'- gCgcgCGCGCuGGUGcgCGCUuGGCGCGc -3'
miRNA:   3'- aGaa-GCGCGuCUACa-GCGAcCUGCGC- -5'
6530 3' -55.5 NC_001847.1 + 117424 0.66 0.891882
Target:  5'- gCUUCGCGCGGcUG-CGCccuggcccucuUGGACaugGCGg -3'
miRNA:   3'- aGAAGCGCGUCuACaGCG-----------ACCUG---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.