miRNA display CGI


Results 1 - 20 of 418 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6535 5' -63.2 NC_001847.1 + 37979 0.65 0.557798
Target:  5'- -cGCGCCgcccugccucauuaUGCUGGauacgcauCUGCagcucGCGCGGGUGc -3'
miRNA:   3'- caUGCGG--------------ACGACC--------GACG-----CGCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 389 0.66 0.554878
Target:  5'- -cGCGCCggaccgcGCUccgaccgagaccgagGGCccgggGCGgGCGGGCGg -3'
miRNA:   3'- caUGCGGa------CGA---------------CCGa----CGCgCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 103202 0.66 0.554878
Target:  5'- -cGCGCCggaccgcGCUccgaccgagaccgagGGCccgggGCGgGCGGGCGg -3'
miRNA:   3'- caUGCGGa------CGA---------------CCGa----CGCgCGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 82607 0.66 0.550993
Target:  5'- -gGCGCCUGUgcGCcGCGCGCuGGaGCu -3'
miRNA:   3'- caUGCGGACGacCGaCGCGCG-CC-CGc -5'
6535 5' -63.2 NC_001847.1 + 78012 0.66 0.550993
Target:  5'- aGUACGUCacgGCcaUGGCgucccccaacaUGCGCGCGGcggcGCGg -3'
miRNA:   3'- -CAUGCGGa--CG--ACCG-----------ACGCGCGCC----CGC- -5'
6535 5' -63.2 NC_001847.1 + 30158 0.66 0.550993
Target:  5'- cGUGCGCC--CUGGgUGCGUGgCGcucGGCGg -3'
miRNA:   3'- -CAUGCGGacGACCgACGCGC-GC---CCGC- -5'
6535 5' -63.2 NC_001847.1 + 34926 0.66 0.550993
Target:  5'- uGUcCGCCgccGCUGGCgcaGCuGCGCGGcaucGCGu -3'
miRNA:   3'- -CAuGCGGa--CGACCGa--CG-CGCGCC----CGC- -5'
6535 5' -63.2 NC_001847.1 + 83581 0.66 0.550993
Target:  5'- -gGCGCCgcggaagcGCUGGCgaGCuGCGCcgacgccuGGGCGc -3'
miRNA:   3'- caUGCGGa-------CGACCGa-CG-CGCG--------CCCGC- -5'
6535 5' -63.2 NC_001847.1 + 26424 0.66 0.550993
Target:  5'- --cCGCCUaGC-GGCUgccagaccaacGCGCGCGaGGCa -3'
miRNA:   3'- cauGCGGA-CGaCCGA-----------CGCGCGC-CCGc -5'
6535 5' -63.2 NC_001847.1 + 26508 0.66 0.550993
Target:  5'- -cGgGCCUGCcgGGCgcgggGC-CGgGGGCGu -3'
miRNA:   3'- caUgCGGACGa-CCGa----CGcGCgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 56456 0.66 0.550993
Target:  5'- cGUGUGCUcGCUGGCcaagUG-GCGCGaGGCGg -3'
miRNA:   3'- -CAUGCGGaCGACCG----ACgCGCGC-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 106945 0.66 0.550993
Target:  5'- -aACGCC-GCcgUGGCgcgcagGCGCGCGGcCGc -3'
miRNA:   3'- caUGCGGaCG--ACCGa-----CGCGCGCCcGC- -5'
6535 5' -63.2 NC_001847.1 + 129237 0.66 0.550993
Target:  5'- --cCGCCUaGC-GGCUgccagaccaacGCGCGCGaGGCa -3'
miRNA:   3'- cauGCGGA-CGaCCGA-----------CGCGCGC-CCGc -5'
6535 5' -63.2 NC_001847.1 + 102773 0.66 0.550993
Target:  5'- -gACGCCcGCgacgccGGCgccccccGCGCGgGGGCu -3'
miRNA:   3'- caUGCGGaCGa-----CCGa------CGCGCgCCCGc -5'
6535 5' -63.2 NC_001847.1 + 43554 0.66 0.550993
Target:  5'- -gGCGCC-GC-GGuUUGCGCgcuucgccGCGGGCGa -3'
miRNA:   3'- caUGCGGaCGaCC-GACGCG--------CGCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 129321 0.66 0.550993
Target:  5'- -cGgGCCUGCcgGGCgcgggGC-CGgGGGCGu -3'
miRNA:   3'- caUgCGGACGa-CCGa----CGcGCgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 123460 0.66 0.550993
Target:  5'- cUugGCCcgGCgacGGCcGC-CGCGGGCu -3'
miRNA:   3'- cAugCGGa-CGa--CCGaCGcGCGCCCGc -5'
6535 5' -63.2 NC_001847.1 + 87686 0.66 0.550993
Target:  5'- -gGCGCUgggGCU-GCUGCgGCGCcGcGGCGg -3'
miRNA:   3'- caUGCGGa--CGAcCGACG-CGCG-C-CCGC- -5'
6535 5' -63.2 NC_001847.1 + 59506 0.66 0.547116
Target:  5'- gGUGCGCCgagGCcgcaccggcuuggUGcGCUGCGCucauggcaggcgguGgGGGCGg -3'
miRNA:   3'- -CAUGCGGa--CG-------------AC-CGACGCG--------------CgCCCGC- -5'
6535 5' -63.2 NC_001847.1 + 83629 0.66 0.541316
Target:  5'- --cCGCCUGCcGGCgccGCaccgGCGCGGcGCu -3'
miRNA:   3'- cauGCGGACGaCCGa--CG----CGCGCC-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.