miRNA display CGI


Results 1 - 20 of 491 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 5' -55.5 NC_001847.1 + 2327 0.65 0.890358
Target:  5'- cACGCggGCGgGCAGCggcggcucccgccGCGCCGGc- -3'
miRNA:   3'- cUGUGuaCGCgCGUCGa------------CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 105140 0.65 0.890358
Target:  5'- cACGCggGCGgGCAGCggcggcucccgccGCGCCGGc- -3'
miRNA:   3'- cUGUGuaCGCgCGUCGa------------CGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 133621 0.66 0.888965
Target:  5'- cGGCACAaGCGCGC-GCggggggaacacaacGgGCCAAGGc -3'
miRNA:   3'- -CUGUGUaCGCGCGuCGa-------------CgCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 51557 0.66 0.886151
Target:  5'- cGGCGCAgcucGCcaGCGCuuccGCgGCGCCGGGGc -3'
miRNA:   3'- -CUGUGUa---CG--CGCGu---CGaCGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 31023 0.66 0.886151
Target:  5'- cGGCGCGcGCGCGcCGGCaaCGCCGGc- -3'
miRNA:   3'- -CUGUGUaCGCGC-GUCGacGCGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 63956 0.66 0.886151
Target:  5'- uGGCGCcgGCGCcgGC-GCUGCGCg---- -3'
miRNA:   3'- -CUGUGuaCGCG--CGuCGACGCGguuuc -5'
6562 5' -55.5 NC_001847.1 + 60746 0.66 0.886151
Target:  5'- gGGCGCG-GCGCGguggcgguuuucCAGCUccaGCGCCAcGAGg -3'
miRNA:   3'- -CUGUGUaCGCGC------------GUCGA---CGCGGU-UUC- -5'
6562 5' -55.5 NC_001847.1 + 18435 0.66 0.886151
Target:  5'- -cCACGUGCGcCGCGGCcagccgugcgGUGCCGc-- -3'
miRNA:   3'- cuGUGUACGC-GCGUCGa---------CGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 41173 0.66 0.886151
Target:  5'- cGGCGCggGCGCGCGuGUuaagaggGCGCCcagaAAAGg -3'
miRNA:   3'- -CUGUGuaCGCGCGU-CGa------CGCGG----UUUC- -5'
6562 5' -55.5 NC_001847.1 + 51073 0.66 0.886151
Target:  5'- aGGCGuuCGUGCGCG-GGCUG-GUCGAGGa -3'
miRNA:   3'- -CUGU--GUACGCGCgUCGACgCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 97825 0.66 0.886151
Target:  5'- aGCGCugugcucgGCGCGCgcgGGCUGCGCg---- -3'
miRNA:   3'- cUGUGua------CGCGCG---UCGACGCGguuuc -5'
6562 5' -55.5 NC_001847.1 + 5808 0.66 0.886151
Target:  5'- cGCGCuUGCGCuuGGC-GCGCCGGGu -3'
miRNA:   3'- cUGUGuACGCGcgUCGaCGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 5203 0.66 0.886151
Target:  5'- aGCGCGgcaaGCGCGCcgcgacggaAGCUGCGCa---- -3'
miRNA:   3'- cUGUGUa---CGCGCG---------UCGACGCGguuuc -5'
6562 5' -55.5 NC_001847.1 + 77097 0.66 0.886151
Target:  5'- cGGCgGCccGCGCGCGGUaGCGgCGGGGc -3'
miRNA:   3'- -CUG-UGuaCGCGCGUCGaCGCgGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 36846 0.66 0.886151
Target:  5'- uGGCggACGUGCGCuCGGCgGCgGCCGAGc -3'
miRNA:   3'- -CUG--UGUACGCGcGUCGaCG-CGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 13419 0.66 0.886151
Target:  5'- aGACGg--GCGCGcCAGCgcGCGCCGugAAGa -3'
miRNA:   3'- -CUGUguaCGCGC-GUCGa-CGCGGU--UUC- -5'
6562 5' -55.5 NC_001847.1 + 52736 0.66 0.886151
Target:  5'- ------aGCGCGCAccGgUGCGCCAGAa -3'
miRNA:   3'- cuguguaCGCGCGU--CgACGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 70240 0.66 0.886151
Target:  5'- uGACGCGcgggGCGgGCGGCggGCGCgCGGc- -3'
miRNA:   3'- -CUGUGUa---CGCgCGUCGa-CGCG-GUUuc -5'
6562 5' -55.5 NC_001847.1 + 113799 0.66 0.886151
Target:  5'- cGACg---GCGCGCAucGuCUGCGCCAc-- -3'
miRNA:   3'- -CUGuguaCGCGCGU--C-GACGCGGUuuc -5'
6562 5' -55.5 NC_001847.1 + 46686 0.66 0.886151
Target:  5'- aGCACGcGCGCGCGGUcgGgGCCc--- -3'
miRNA:   3'- cUGUGUaCGCGCGUCGa-CgCGGuuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.