miRNA display CGI


Results 1 - 20 of 491 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6562 5' -55.5 NC_001847.1 + 135134 0.67 0.813492
Target:  5'- -uCGCAggggGCccGCGCGGCgcgGCGCgGAGGg -3'
miRNA:   3'- cuGUGUa---CG--CGCGUCGa--CGCGgUUUC- -5'
6562 5' -55.5 NC_001847.1 + 135031 0.66 0.871516
Target:  5'- cGGgGCcgGgGCGCGGg-GCGCCGGAc -3'
miRNA:   3'- -CUgUGuaCgCGCGUCgaCGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 134763 0.69 0.696077
Target:  5'- aGCGCGguccgGCGCGCGGC-GCGCgGGGc -3'
miRNA:   3'- cUGUGUa----CGCGCGUCGaCGCGgUUUc -5'
6562 5' -55.5 NC_001847.1 + 134659 0.68 0.785845
Target:  5'- aGGCGCGgagGCGCG-GGCacccaugacgGCGCCGAAGc -3'
miRNA:   3'- -CUGUGUa--CGCGCgUCGa---------CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 134529 0.69 0.746981
Target:  5'- aGGCGCGggccGCGCGCcGCUGCggagcgGCCGcgGAGg -3'
miRNA:   3'- -CUGUGUa---CGCGCGuCGACG------CGGU--UUC- -5'
6562 5' -55.5 NC_001847.1 + 134233 0.68 0.756882
Target:  5'- cGGCGCcgGCGgGCGGCggccgGCgGCCGcGGc -3'
miRNA:   3'- -CUGUGuaCGCgCGUCGa----CG-CGGUuUC- -5'
6562 5' -55.5 NC_001847.1 + 134192 0.67 0.813492
Target:  5'- cGGCGCAgcguggagcgGCGCGC-GC-GgGCCGAGGg -3'
miRNA:   3'- -CUGUGUa---------CGCGCGuCGaCgCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 134107 0.68 0.785845
Target:  5'- aGACGCucGUGCuGCuGCGGC-GCGCCGcGGg -3'
miRNA:   3'- -CUGUG--UACG-CG-CGUCGaCGCGGUuUC- -5'
6562 5' -55.5 NC_001847.1 + 133888 0.67 0.813492
Target:  5'- gGGgGCucgGCGCGCcGCUGCgGCCGGu- -3'
miRNA:   3'- -CUgUGua-CGCGCGuCGACG-CGGUUuc -5'
6562 5' -55.5 NC_001847.1 + 133621 0.66 0.888965
Target:  5'- cGGCACAaGCGCGC-GCggggggaacacaacGgGCCAAGGc -3'
miRNA:   3'- -CUGUGUaCGCGCGuCGa-------------CgCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 133580 0.66 0.855972
Target:  5'- gGACACAgGCGCG-GGC-GCGCUAucGg -3'
miRNA:   3'- -CUGUGUaCGCGCgUCGaCGCGGUuuC- -5'
6562 5' -55.5 NC_001847.1 + 133540 0.66 0.855972
Target:  5'- cGGCGCAgUGCGcCGCGcGCUG-GCCcGAGc -3'
miRNA:   3'- -CUGUGU-ACGC-GCGU-CGACgCGGuUUC- -5'
6562 5' -55.5 NC_001847.1 + 133395 0.74 0.460148
Target:  5'- cGGCGCGguggaguaccucUGCGCGCGGCUG-GCCGcGGc -3'
miRNA:   3'- -CUGUGU------------ACGCGCGUCGACgCGGUuUC- -5'
6562 5' -55.5 NC_001847.1 + 133180 0.66 0.87895
Target:  5'- uGCGCggGCGCG-GGCUGCccucGCUGGAGg -3'
miRNA:   3'- cUGUGuaCGCGCgUCGACG----CGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 132558 0.69 0.735967
Target:  5'- -uCGCGUGCggccgcggcggccGCGCAgGCgcccGCGCCGAAGa -3'
miRNA:   3'- cuGUGUACG-------------CGCGU-CGa---CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 132385 0.69 0.746981
Target:  5'- gGGCGCcgGCGC-CGGCgccgccGCGCCGGGc -3'
miRNA:   3'- -CUGUGuaCGCGcGUCGa-----CGCGGUUUc -5'
6562 5' -55.5 NC_001847.1 + 132157 0.7 0.658475
Target:  5'- cGCGCGgcuccaGCGCGCGGCcccggcggcgcugcGCGCCGAGGc -3'
miRNA:   3'- cUGUGUa-----CGCGCGUCGa-------------CGCGGUUUC- -5'
6562 5' -55.5 NC_001847.1 + 131938 0.7 0.633219
Target:  5'- aGGCACGUGCGC-CGGCgaugGCGgCGAc- -3'
miRNA:   3'- -CUGUGUACGCGcGUCGa---CGCgGUUuc -5'
6562 5' -55.5 NC_001847.1 + 131919 0.73 0.469728
Target:  5'- cGGCGCGggcgGCGCGCgagcGGCUGCGCgAGc- -3'
miRNA:   3'- -CUGUGUa---CGCGCG----UCGACGCGgUUuc -5'
6562 5' -55.5 NC_001847.1 + 131877 0.67 0.831066
Target:  5'- -uCGCcgGcCGCGCGGCgccgGCGCCc--- -3'
miRNA:   3'- cuGUGuaC-GCGCGUCGa---CGCGGuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.