miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6567 5' -54.1 NC_001847.1 + 33669 0.65 0.944232
Target:  5'- cCGCGGCCCgcgCGgggcuagaGGCGCAggcgcucgcggcGCGGcGGCg -3'
miRNA:   3'- -GUGCCGGGa--GU--------UCGUGUaa----------UGUC-CCG- -5'
6567 5' -54.1 NC_001847.1 + 52761 0.65 0.944232
Target:  5'- aGCGGCCCgcccugacCAuugacaugguguAGCGCGgcggcgacauggGCGGGGCu -3'
miRNA:   3'- gUGCCGGGa-------GU------------UCGUGUaa----------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 130128 0.66 0.941426
Target:  5'- aGC-GCCCUCGcGCGCG----AGGGCg -3'
miRNA:   3'- gUGcCGGGAGUuCGUGUaaugUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 124559 0.66 0.941426
Target:  5'- -cCGGCCCgc--GCGCGcgGgGGGGCc -3'
miRNA:   3'- guGCCGGGaguuCGUGUaaUgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 131992 0.66 0.941426
Target:  5'- gGCGGCCCgccgCGccgccGGCGCc--GCcGGGCu -3'
miRNA:   3'- gUGCCGGGa---GU-----UCGUGuaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 34298 0.66 0.941426
Target:  5'- uCGCGGCCgUC-AGCGag--GCuucGGGCg -3'
miRNA:   3'- -GUGCCGGgAGuUCGUguaaUGu--CCCG- -5'
6567 5' -54.1 NC_001847.1 + 6731 0.66 0.941426
Target:  5'- -cUGGCCCUCAA-CAUA--GC-GGGCg -3'
miRNA:   3'- guGCCGGGAGUUcGUGUaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 69455 0.66 0.941426
Target:  5'- gGCGGCgCgc--GCGCGgcggcgGCGGGGCu -3'
miRNA:   3'- gUGCCGgGaguuCGUGUaa----UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 85182 0.66 0.941426
Target:  5'- gCACGGCCUgCGcGUACucgGCGccGGGCa -3'
miRNA:   3'- -GUGCCGGGaGUuCGUGuaaUGU--CCCG- -5'
6567 5' -54.1 NC_001847.1 + 100891 0.66 0.941426
Target:  5'- gCGCGGCCggCGGGagACGggguCGGGGCu -3'
miRNA:   3'- -GUGCCGGgaGUUCg-UGUaau-GUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 96625 0.66 0.941426
Target:  5'- gUACGGCCa--GAGCACAgcGCc-GGCg -3'
miRNA:   3'- -GUGCCGGgagUUCGUGUaaUGucCCG- -5'
6567 5' -54.1 NC_001847.1 + 69410 0.66 0.941426
Target:  5'- cCAC-GCUCUCGAGCGCcgccccgGC-GGGCu -3'
miRNA:   3'- -GUGcCGGGAGUUCGUGuaa----UGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 50782 0.66 0.941426
Target:  5'- cCGCGGCCgCUCAauacaccucgcGGCGCugcggccggUACgguuuuacgggGGGGCg -3'
miRNA:   3'- -GUGCCGG-GAGU-----------UCGUGua-------AUG-----------UCCCG- -5'
6567 5' -54.1 NC_001847.1 + 21746 0.66 0.941426
Target:  5'- -cCGGCCCgc--GCGCGcgGgGGGGCc -3'
miRNA:   3'- guGCCGGGaguuCGUGUaaUgUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 96439 0.66 0.941426
Target:  5'- gCGCGGCCC-CGgaGGCAC--UGgAGGcGCu -3'
miRNA:   3'- -GUGCCGGGaGU--UCGUGuaAUgUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 93084 0.66 0.941426
Target:  5'- --aGGCCCcCGcGCGCGcccgcaaaGCGGGGCg -3'
miRNA:   3'- gugCCGGGaGUuCGUGUaa------UGUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 85998 0.66 0.941426
Target:  5'- gCGCGGCaacaaCUCAaaaaaggcggGGCGCG--GCGGGaGCg -3'
miRNA:   3'- -GUGCCGg----GAGU----------UCGUGUaaUGUCC-CG- -5'
6567 5' -54.1 NC_001847.1 + 29179 0.66 0.941426
Target:  5'- gGCGGCCCgccgCGccgccGGCGCc--GCcGGGCu -3'
miRNA:   3'- gUGCCGGGa---GU-----UCGUGuaaUGuCCCG- -5'
6567 5' -54.1 NC_001847.1 + 115082 0.66 0.94047
Target:  5'- gCGCaGGCag-CGAGCGCAUUuuugcccgcgccCAGGGCg -3'
miRNA:   3'- -GUG-CCGggaGUUCGUGUAAu-----------GUCCCG- -5'
6567 5' -54.1 NC_001847.1 + 128166 0.66 0.93853
Target:  5'- cCAC-GCCggCAAGCugAUggcagggggcggcgGCAGGGCg -3'
miRNA:   3'- -GUGcCGGgaGUUCGugUAa-------------UGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.