miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6574 3' -62.3 NC_001847.1 + 104927 0.66 0.602481
Target:  5'- gGCCcGGGcGCGC-GCGGCuuCGGcGCGCg -3'
miRNA:   3'- aUGGaCCU-CGCGaCGCUGc-GCC-CGCG- -5'
6574 3' -62.3 NC_001847.1 + 81702 0.66 0.602481
Target:  5'- --gCUGcGcGCGCUGCGgcACGCGcGCGCc -3'
miRNA:   3'- augGAC-CuCGCGACGC--UGCGCcCGCG- -5'
6574 3' -62.3 NC_001847.1 + 89822 0.66 0.602481
Target:  5'- cGCCgUGGAGCGC-GCGGCcaacGCGCg -3'
miRNA:   3'- aUGG-ACCUCGCGaCGCUGcgccCGCG- -5'
6574 3' -62.3 NC_001847.1 + 45087 0.66 0.602481
Target:  5'- gUGCUcgUGGuGCGCcGgGACGgGGGUGg -3'
miRNA:   3'- -AUGG--ACCuCGCGaCgCUGCgCCCGCg -5'
6574 3' -62.3 NC_001847.1 + 77065 0.66 0.602481
Target:  5'- ----cGGcaccCGCUGCGGCGCGcGCGCg -3'
miRNA:   3'- auggaCCuc--GCGACGCUGCGCcCGCG- -5'
6574 3' -62.3 NC_001847.1 + 28287 0.66 0.602481
Target:  5'- cGCgaGGA-CGCgGCGuGCGUGGGUGUg -3'
miRNA:   3'- aUGgaCCUcGCGaCGC-UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 88351 0.66 0.602481
Target:  5'- gACggGGGGaacgaGggGCG-CGCGGGCGCg -3'
miRNA:   3'- aUGgaCCUCg----CgaCGCuGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 110205 0.66 0.602481
Target:  5'- gUACCUcGAGCccuggcaCUGCGACguGCGGGcCGUg -3'
miRNA:   3'- -AUGGAcCUCGc------GACGCUG--CGCCC-GCG- -5'
6574 3' -62.3 NC_001847.1 + 59564 0.66 0.602481
Target:  5'- gGCCUGGAGCacuuuuuuUUGcCGGCGCucacGGGCaGCu -3'
miRNA:   3'- aUGGACCUCGc-------GAC-GCUGCG----CCCG-CG- -5'
6574 3' -62.3 NC_001847.1 + 36382 0.66 0.601488
Target:  5'- gGCCcgGGcAGCGCgcgccGCGGCGaCGGugcacucGCGCg -3'
miRNA:   3'- aUGGa-CC-UCGCGa----CGCUGC-GCC-------CGCG- -5'
6574 3' -62.3 NC_001847.1 + 4564 0.66 0.601488
Target:  5'- gGCgUGGAaguggaaGUGgUGCGGguCGCGGuGCGCg -3'
miRNA:   3'- aUGgACCU-------CGCgACGCU--GCGCC-CGCG- -5'
6574 3' -62.3 NC_001847.1 + 57989 0.66 0.601488
Target:  5'- gACCggcgcggUGGcGGCGCagGCGGCGgCGGucGCGCg -3'
miRNA:   3'- aUGG-------ACC-UCGCGa-CGCUGC-GCC--CGCG- -5'
6574 3' -62.3 NC_001847.1 + 43700 0.66 0.600496
Target:  5'- cGCaCUGGcgugcuuugcgcGCGCUGCG-CGCGgacgugguGGCGCa -3'
miRNA:   3'- aUG-GACCu-----------CGCGACGCuGCGC--------CCGCG- -5'
6574 3' -62.3 NC_001847.1 + 53920 0.66 0.592567
Target:  5'- cGCCcGGAG-GCgacgGCGACGgCGGcucuguGCGCg -3'
miRNA:   3'- aUGGaCCUCgCGa---CGCUGC-GCC------CGCG- -5'
6574 3' -62.3 NC_001847.1 + 124588 0.66 0.592567
Target:  5'- cGCCgGGcccGGCGC--CGGC-CGGGCGCg -3'
miRNA:   3'- aUGGaCC---UCGCGacGCUGcGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 69266 0.66 0.592567
Target:  5'- cGgCUGGcGGCgGCcGCGggcuuccucuACGCGGGCGUg -3'
miRNA:   3'- aUgGACC-UCG-CGaCGC----------UGCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 125423 0.66 0.592567
Target:  5'- cGCgUGGcaAGCGagugGCcGCGCaGGGCGCg -3'
miRNA:   3'- aUGgACC--UCGCga--CGcUGCG-CCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 14920 0.66 0.592567
Target:  5'- cUGCCUcGccGCgauacacaagGCUGCGA-GCGGGCGCc -3'
miRNA:   3'- -AUGGA-CcuCG----------CGACGCUgCGCCCGCG- -5'
6574 3' -62.3 NC_001847.1 + 22395 0.66 0.592567
Target:  5'- cGCCcGGGcCGCgGCGAgcgugcucgucCGCGGGgGCg -3'
miRNA:   3'- aUGGaCCUcGCGaCGCU-----------GCGCCCgCG- -5'
6574 3' -62.3 NC_001847.1 + 93398 0.66 0.592567
Target:  5'- -cCCUGGAGUacaucUUGCGGCuaauggccaGCuGGGCGCa -3'
miRNA:   3'- auGGACCUCGc----GACGCUG---------CG-CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.