miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6585 3' -55.7 NC_001847.1 + 21736 0.66 0.909062
Target:  5'- cGGGcCGGCgccggcccGCGcGcgCGggGGGGCCGc -3'
miRNA:   3'- -CUC-GCUGa-------CGCaCuaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 124549 0.66 0.909062
Target:  5'- cGGGcCGGCgccggcccGCGcGcgCGggGGGGCCGc -3'
miRNA:   3'- -CUC-GCUGa-------CGCaCuaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 90931 0.66 0.905345
Target:  5'- cGGGCGACgGCGUaguggggcaacaccaGcuggcucUCGAAGGGGCUGu -3'
miRNA:   3'- -CUCGCUGaCGCA---------------Cu------AGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 14860 0.66 0.905345
Target:  5'- cGAGCG-UUGCGUcGGUCGGguGGAcagcgaacgcuacggGGCCGu -3'
miRNA:   3'- -CUCGCuGACGCA-CUAGCU--UCU---------------CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 36181 0.66 0.902819
Target:  5'- -uGCGGCg--GUGcgCGgcGAGGCCGc -3'
miRNA:   3'- cuCGCUGacgCACuaGCuuCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 108000 0.66 0.902819
Target:  5'- -cGCGGCUGCGccccccggacgGcaguuucgcgacGUCGAAGAGGCUu -3'
miRNA:   3'- cuCGCUGACGCa----------C------------UAGCUUCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 485 0.66 0.896339
Target:  5'- cAGCGGCgGCGg---CGggGcGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCacuaGCuuCuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 25296 0.66 0.896339
Target:  5'- gGGGUGggaaGCUGCgGUGGUCGuccacAGGGGCgCGg -3'
miRNA:   3'- -CUCGC----UGACG-CACUAGCu----UCUCCG-GC- -5'
6585 3' -55.7 NC_001847.1 + 115289 0.66 0.896339
Target:  5'- uGAGCGugUccacaGCGgcgcCGGAGGGGCUGa -3'
miRNA:   3'- -CUCGCugA-----CGCacuaGCUUCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 21872 0.66 0.896339
Target:  5'- cGGgGGCUGCG-GcgCGcugccGAGGCCGa -3'
miRNA:   3'- cUCgCUGACGCaCuaGCuu---CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 128109 0.66 0.896339
Target:  5'- gGGGUGggaaGCUGCgGUGGUCGuccacAGGGGCgCGg -3'
miRNA:   3'- -CUCGC----UGACG-CACUAGCu----UCUCCG-GC- -5'
6585 3' -55.7 NC_001847.1 + 103298 0.66 0.896339
Target:  5'- cAGCGGCgGCGg---CGggGcGGCCGc -3'
miRNA:   3'- cUCGCUGaCGCacuaGCuuCuCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 78994 0.66 0.889624
Target:  5'- cGGGCGGCUGC-UGAgccaccccGGAGGCUGc -3'
miRNA:   3'- -CUCGCUGACGcACUagcu----UCUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 62208 0.66 0.889624
Target:  5'- -uGCGGCUGCGUGAgcguaaaccCGAcGccGCCGa -3'
miRNA:   3'- cuCGCUGACGCACUa--------GCUuCucCGGC- -5'
6585 3' -55.7 NC_001847.1 + 12826 0.66 0.882678
Target:  5'- cGAGCGGC-GCGcu-UgGGAGAuGGCCGg -3'
miRNA:   3'- -CUCGCUGaCGCacuAgCUUCU-CCGGC- -5'
6585 3' -55.7 NC_001847.1 + 118105 0.66 0.882678
Target:  5'- cGAGCuGC-GCGUGuacuUCGAGggcggcGAGGCCGu -3'
miRNA:   3'- -CUCGcUGaCGCACu---AGCUU------CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 34473 0.66 0.879835
Target:  5'- cGGCGGCgaggaugcggacgGCGgcgagGAUgCGAGcGAGGCCGa -3'
miRNA:   3'- cUCGCUGa------------CGCa----CUA-GCUU-CUCCGGC- -5'
6585 3' -55.7 NC_001847.1 + 35772 0.66 0.875505
Target:  5'- cAGUGugUGCuaggcugGGUCGcAGGGGCCa -3'
miRNA:   3'- cUCGCugACGca-----CUAGCuUCUCCGGc -5'
6585 3' -55.7 NC_001847.1 + 95261 0.66 0.875505
Target:  5'- -cGCGAUcggggGCGcGAUCGggGGcGCCGg -3'
miRNA:   3'- cuCGCUGa----CGCaCUAGCuuCUcCGGC- -5'
6585 3' -55.7 NC_001847.1 + 59906 0.66 0.875505
Target:  5'- aGGGCGGCgcGCGcGcgCGgcGAGaGCCGg -3'
miRNA:   3'- -CUCGCUGa-CGCaCuaGCuuCUC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.