miRNA display CGI


Results 1 - 20 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6589 3' -59.5 NC_001847.1 + 47313 0.66 0.69706
Target:  5'- -cGCcCGC-CGGCGUGAUGUugcagcGGGCGAu -3'
miRNA:   3'- auCGuGCGuGUCGCGCUGCA------CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 20893 0.66 0.69706
Target:  5'- cGGCugGgcaGCgAGCGCGuCGcGGGCGAg -3'
miRNA:   3'- aUCGugCg--UG-UCGCGCuGCaCCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 66111 0.66 0.69706
Target:  5'- -cGUACGCcgACAGCGCGACGcaccGCAGc -3'
miRNA:   3'- auCGUGCG--UGUCGCGCUGCacc-CGUU- -5'
6589 3' -59.5 NC_001847.1 + 18621 0.66 0.697059
Target:  5'- cGGCGCGCGCguAGCGCaggcaGAgGUGcucGGCGAg -3'
miRNA:   3'- aUCGUGCGUG--UCGCG-----CUgCAC---CCGUU- -5'
6589 3' -59.5 NC_001847.1 + 102437 0.66 0.697059
Target:  5'- gGGCGCcuuGCACAGCGgGcAgGUcGGGCGc -3'
miRNA:   3'- aUCGUG---CGUGUCGCgC-UgCA-CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 87904 0.66 0.697059
Target:  5'- gGGCuuUGCACaggGGCGgGGCGUGGGg-- -3'
miRNA:   3'- aUCGu-GCGUG---UCGCgCUGCACCCguu -5'
6589 3' -59.5 NC_001847.1 + 33885 0.66 0.697059
Target:  5'- aGGCGC-CGCcGCGCGugGccgcGGGCGu -3'
miRNA:   3'- aUCGUGcGUGuCGCGCugCa---CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 100656 0.66 0.697059
Target:  5'- gGGC-CGCGCuGCuGCGGCGggGGGUc- -3'
miRNA:   3'- aUCGuGCGUGuCG-CGCUGCa-CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 44242 0.66 0.697059
Target:  5'- gGGCGugggGCugAGCGCGccgGCGacUGGGCAAc -3'
miRNA:   3'- aUCGUg---CGugUCGCGC---UGC--ACCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 27773 0.66 0.696044
Target:  5'- cGGgGCGUACAauaaacuGCGCGGCGggugcGGGCu- -3'
miRNA:   3'- aUCgUGCGUGU-------CGCGCUGCa----CCCGuu -5'
6589 3' -59.5 NC_001847.1 + 85648 0.66 0.696044
Target:  5'- aGGCGCGCGucagguuUGGCGCGGcCGUGcuGGCGc -3'
miRNA:   3'- aUCGUGCGU-------GUCGCGCU-GCAC--CCGUu -5'
6589 3' -59.5 NC_001847.1 + 51543 0.66 0.694012
Target:  5'- cGGCGCccaggcgucgGCGCAGCucgccagcgcuuccGCGGCGccgGGGCAGc -3'
miRNA:   3'- aUCGUG----------CGUGUCG--------------CGCUGCa--CCCGUU- -5'
6589 3' -59.5 NC_001847.1 + 66517 0.66 0.686881
Target:  5'- gGGCugGaGCuGCGCGGCuggGGGCGc -3'
miRNA:   3'- aUCGugCgUGuCGCGCUGca-CCCGUu -5'
6589 3' -59.5 NC_001847.1 + 73857 0.66 0.686881
Target:  5'- cUGGCGCGCuaggcgGCGGCGCGGCGcccGCGc -3'
miRNA:   3'- -AUCGUGCG------UGUCGCGCUGCaccCGUu -5'
6589 3' -59.5 NC_001847.1 + 60800 0.66 0.686881
Target:  5'- -cGCGCGCcacCAGCGCGcGCGccUGcGGCAGc -3'
miRNA:   3'- auCGUGCGu--GUCGCGC-UGC--AC-CCGUU- -5'
6589 3' -59.5 NC_001847.1 + 62504 0.66 0.686881
Target:  5'- gUAGUugGCGCccacaaAGUGCGGCacGGGCGg -3'
miRNA:   3'- -AUCGugCGUG------UCGCGCUGcaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 11368 0.66 0.68688
Target:  5'- cGGC-CGCGCGGCGCGAUcaacuacGGGaCGAc -3'
miRNA:   3'- aUCGuGCGUGUCGCGCUGca-----CCC-GUU- -5'
6589 3' -59.5 NC_001847.1 + 84534 0.66 0.68688
Target:  5'- aUGGUugGCG-GGCGgGGCG-GGGCGu -3'
miRNA:   3'- -AUCGugCGUgUCGCgCUGCaCCCGUu -5'
6589 3' -59.5 NC_001847.1 + 17376 0.66 0.68688
Target:  5'- cAGCggGCGCGCGGUGCGuCGUGacGGUc- -3'
miRNA:   3'- aUCG--UGCGUGUCGCGCuGCAC--CCGuu -5'
6589 3' -59.5 NC_001847.1 + 38016 0.66 0.68688
Target:  5'- cAGCuCGCGCGG-GUGcUGUGGGCGc -3'
miRNA:   3'- aUCGuGCGUGUCgCGCuGCACCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.