miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6592 3' -50.8 NC_001847.1 + 119141 0.66 0.995819
Target:  5'- uGGcGAGCucGUCGgcgCCGCGgcCGCcGCGg -3'
miRNA:   3'- -CCaCUUG--CAGCa--GGUGCauGCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 130789 0.66 0.995819
Target:  5'- cGGUGGAgG-CGgCCGCGgcCGgGGCGg -3'
miRNA:   3'- -CCACUUgCaGCaGGUGCauGCgUUGC- -5'
6592 3' -50.8 NC_001847.1 + 69032 0.66 0.995819
Target:  5'- cGGUGcgucGCGcUGUCgGCGUACggggGCGACGu -3'
miRNA:   3'- -CCACu---UGCaGCAGgUGCAUG----CGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 69444 0.66 0.995819
Target:  5'- cGGUGGcggACGgCGg-CGCGcGCGCGGCGg -3'
miRNA:   3'- -CCACU---UGCaGCagGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 27976 0.66 0.995819
Target:  5'- cGGUGGAgG-CGgCCGCGgcCGgGGCGg -3'
miRNA:   3'- -CCACUUgCaGCaGGUGCauGCgUUGC- -5'
6592 3' -50.8 NC_001847.1 + 101794 0.66 0.995125
Target:  5'- gGGUGAgguGCGagGggcCCAcCGUcACGCAGCGc -3'
miRNA:   3'- -CCACU---UGCagCa--GGU-GCA-UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 104888 0.66 0.995125
Target:  5'- cGGUGGcgGCGagCGccCCGCGgggcccGCGCGGCGg -3'
miRNA:   3'- -CCACU--UGCa-GCa-GGUGCa-----UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 2075 0.66 0.995125
Target:  5'- cGGUGGcgGCGagCGccCCGCGgggcccGCGCGGCGg -3'
miRNA:   3'- -CCACU--UGCa-GCa-GGUGCa-----UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 14167 0.66 0.995125
Target:  5'- --aGGGCGaCGgCCGCGcuUACGCGGCGc -3'
miRNA:   3'- ccaCUUGCaGCaGGUGC--AUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 80754 0.66 0.99434
Target:  5'- cGUGGACuUgGUCCGCGccgGCGCGGa- -3'
miRNA:   3'- cCACUUGcAgCAGGUGCa--UGCGUUgc -5'
6592 3' -50.8 NC_001847.1 + 18653 0.66 0.99434
Target:  5'- cGGUGAGCGaUCcggcgggaGUgCAgGUACGCGAgGc -3'
miRNA:   3'- -CCACUUGC-AG--------CAgGUgCAUGCGUUgC- -5'
6592 3' -50.8 NC_001847.1 + 39767 0.66 0.993456
Target:  5'- --gGAGCGUCGggCAUGUAUGUuGCGc -3'
miRNA:   3'- ccaCUUGCAGCagGUGCAUGCGuUGC- -5'
6592 3' -50.8 NC_001847.1 + 103424 0.66 0.993456
Target:  5'- aGGgcu-CGUCGUCCAgGUAUGUcuCGc -3'
miRNA:   3'- -CCacuuGCAGCAGGUgCAUGCGuuGC- -5'
6592 3' -50.8 NC_001847.1 + 40687 0.66 0.993456
Target:  5'- aGGUGGACucgagagaGUCgGUCUGCGUGgGCGAa- -3'
miRNA:   3'- -CCACUUG--------CAG-CAGGUGCAUgCGUUgc -5'
6592 3' -50.8 NC_001847.1 + 55082 0.66 0.993456
Target:  5'- uGGUGGgcACGUCGUUCuCGcACcucgGCGGCGg -3'
miRNA:   3'- -CCACU--UGCAGCAGGuGCaUG----CGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 85174 0.66 0.992465
Target:  5'- cGUGGcucuCGUCGaaggCUAgGUGCGCGGCa -3'
miRNA:   3'- cCACUu---GCAGCa---GGUgCAUGCGUUGc -5'
6592 3' -50.8 NC_001847.1 + 30587 0.66 0.992465
Target:  5'- cGGUGGaguaccucuGCGcgCGgcuggCCGCG-GCGCGGCGg -3'
miRNA:   3'- -CCACU---------UGCa-GCa----GGUGCaUGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 17156 0.66 0.992465
Target:  5'- gGGUGGGCGguuggcgucgCGUCCuCGaGCGUaagGACGg -3'
miRNA:   3'- -CCACUUGCa---------GCAGGuGCaUGCG---UUGC- -5'
6592 3' -50.8 NC_001847.1 + 45567 0.66 0.992465
Target:  5'- cGGc-GGCGUCGcgcUCCACGcccucgccggGCGCGACGa -3'
miRNA:   3'- -CCacUUGCAGC---AGGUGCa---------UGCGUUGC- -5'
6592 3' -50.8 NC_001847.1 + 50052 0.66 0.992465
Target:  5'- cGGUGGcggccGCGg-GUCCGC--GCGCGGCGc -3'
miRNA:   3'- -CCACU-----UGCagCAGGUGcaUGCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.