miRNA display CGI

Results 1 - 20 of 1679 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6592	5'	-68.8	NC_001847.1	+	130063	0.65	0.37562
	Target:  5'- -gCGaCGGCGaCGCGuCGccguccuGG-GCCGCGCCc -3' miRNA:   3'- agGC-GCCGC-GCGC-GC-------CCgCGGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	96877	0.65	0.37562
	Target:  5'- gCCGCccGCGCGUGCGgaaauaaauugucGGUGgCGUGCUg -3' miRNA:   3'- aGGCGc-CGCGCGCGC-------------CCGCgGCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	75524	0.65	0.37562
	Target:  5'- gUCGCGGgcggcgucugcauUGCGCuucccgucGCGGGCGgaCGCGCa -3' miRNA:   3'- aGGCGCC-------------GCGCG--------CGCCCGCg-GCGCGg -5'
6592	5'	-68.8	NC_001847.1	+	33862	0.66	0.371869
	Target:  5'- aCCGCgggcuggggGGCGgGCagugaggagggacgaGgGGaGCGCCGgGCCa -3' miRNA:   3'- aGGCG---------CCGCgCG---------------CgCC-CGCGGCgCGG- -5'
6592	5'	-68.8	NC_001847.1	+	91687	0.66	0.371869
	Target:  5'- gCUGCGGCuGCG-GCucccgcuucgcucucGGGCaCCGCGCg -3' miRNA:   3'- aGGCGCCG-CGCgCG---------------CCCGcGGCGCGg -5'
6592	5'	-68.8	NC_001847.1	+	24159	0.66	0.371869
	Target:  5'- gUCCucgaaCGGCGCGCagccguacucgcacaGCGuGGCGCUGgugGCCa -3' miRNA:   3'- -AGGc----GCCGCGCG---------------CGC-CCGCGGCg--CGG- -5'
6592	5'	-68.8	NC_001847.1	+	133334	0.66	0.368887
	Target:  5'- -aCGUGaGCGCGCuCGGcGCGCagggCGUGCUg -3' miRNA:   3'- agGCGC-CGCGCGcGCC-CGCG----GCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	113166	0.66	0.368887
	Target:  5'- ---aCGGCG-GCGaGGGgGCCGcCGCCg -3' miRNA:   3'- aggcGCCGCgCGCgCCCgCGGC-GCGG- -5'
6592	5'	-68.8	NC_001847.1	+	111294	0.66	0.368887
	Target:  5'- --gGCGGCGCucgGC-CGGGgGCgGgGCCc -3' miRNA:   3'- aggCGCCGCG---CGcGCCCgCGgCgCGG- -5'
6592	5'	-68.8	NC_001847.1	+	63142	0.66	0.368887
	Target:  5'- gCUGUGGCaccggaucccgGCGCGCaGGCGCgCaCGUCg -3' miRNA:   3'- aGGCGCCG-----------CGCGCGcCCGCG-GcGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	70212	0.66	0.368887
	Target:  5'- gCUGCuGCGCGUGCugcuggagaaGGCGCCGCcgauGUCg -3' miRNA:   3'- aGGCGcCGCGCGCGc---------CCGCGGCG----CGG- -5'
6592	5'	-68.8	NC_001847.1	+	8481	0.66	0.368887
	Target:  5'- --gGCGGCGCucgGC-CGGGgGCgGgGCCc -3' miRNA:   3'- aggCGCCGCG---CGcGCCCgCGgCgCGG- -5'
6592	5'	-68.8	NC_001847.1	+	10353	0.66	0.368887
	Target:  5'- ---aCGGCG-GCGaGGGgGCCGcCGCCg -3' miRNA:   3'- aggcGCCGCgCGCgCCCgCGGC-GCGG- -5'
6592	5'	-68.8	NC_001847.1	+	30521	0.66	0.368887
	Target:  5'- -aCGUGaGCGCGCuCGGcGCGCagggCGUGCUg -3' miRNA:   3'- agGCGC-CGCGCGcGCC-CGCG----GCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	112323	0.66	0.368887
	Target:  5'- aCCuCGGCGgGgaGCGGcCGCCGCcgGCCc -3' miRNA:   3'- aGGcGCCGCgCg-CGCCcGCGGCG--CGG- -5'
6592	5'	-68.8	NC_001847.1	+	7188	0.66	0.368887
	Target:  5'- aUCCGCuucggcuuuaGGCaGC-CGCGGcCGCCGC-CCg -3' miRNA:   3'- -AGGCG----------CCG-CGcGCGCCcGCGGCGcGG- -5'
6592	5'	-68.8	NC_001847.1	+	44090	0.66	0.368887
	Target:  5'- gCUGCGGCGUcuGCGCccGcCGCCuGCGCg -3' miRNA:   3'- aGGCGCCGCG--CGCGccC-GCGG-CGCGg -5'
6592	5'	-68.8	NC_001847.1	+	82718	0.66	0.368887
	Target:  5'- gUCCaUGuGCuccaCGCGCGGGC-CCaGCGCCu -3' miRNA:   3'- -AGGcGC-CGc---GCGCGCCCGcGG-CGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	88589	0.66	0.368887
	Target:  5'- -aCGCGacguucgaCGUGgGCGGGCGC-GCGCUc -3' miRNA:   3'- agGCGCc-------GCGCgCGCCCGCGgCGCGG- -5'
6592	5'	-68.8	NC_001847.1	+	123791	0.66	0.368887
	Target:  5'- -gCGCGGC-CGCGCGuacgaGUGCUcccgcuccgGCGCCa -3' miRNA:   3'- agGCGCCGcGCGCGCc----CGCGG---------CGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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