miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 58788 0.66 0.934716
Target:  5'- cGACCGGGGucCGcCCCGGCg------- -3'
miRNA:   3'- cCUGGCCCU--GCuGGGCCGgaaauaug -5'
6617 3' -55.3 NC_001847.1 + 62477 0.66 0.934716
Target:  5'- aGGGCCGGGgucgccggcggGCGGCCgcgggguggCGGCCa------ -3'
miRNA:   3'- -CCUGGCCC-----------UGCUGG---------GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 43608 0.66 0.934716
Target:  5'- gGGGCCGGuGCuGGCCaCGGCCc------ -3'
miRNA:   3'- -CCUGGCCcUG-CUGG-GCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 111414 0.66 0.934716
Target:  5'- -cGCCaGGGGCGgcGCUCGGCCgggg-GCg -3'
miRNA:   3'- ccUGG-CCCUGC--UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 37149 0.66 0.934716
Target:  5'- cGGGCCuuuGGGGCGGCCgggaagCGGCaccucGUGCu -3'
miRNA:   3'- -CCUGG---CCCUGCUGG------GCCGgaaa-UAUG- -5'
6617 3' -55.3 NC_001847.1 + 90379 0.66 0.934716
Target:  5'- uGGACgCGGaccACGGCCCccGGCCguacGUGCu -3'
miRNA:   3'- -CCUG-GCCc--UGCUGGG--CCGGaaa-UAUG- -5'
6617 3' -55.3 NC_001847.1 + 8601 0.66 0.934716
Target:  5'- -cGCCaGGGGCGgcGCUCGGCCgggg-GCg -3'
miRNA:   3'- ccUGG-CCCUGC--UGGGCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 37214 0.66 0.933215
Target:  5'- cGGuGCCGcuuggcggcggcgcGGACGACCCGGCggacg-GCg -3'
miRNA:   3'- -CC-UGGC--------------CCUGCUGGGCCGgaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 87358 0.66 0.929628
Target:  5'- aGGGCCuGGcCGAgcaCCCGGCCg------ -3'
miRNA:   3'- -CCUGGcCCuGCU---GGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 14864 0.66 0.929628
Target:  5'- cGGCCGGG-CGACCCcauGGUCg------ -3'
miRNA:   3'- cCUGGCCCuGCUGGG---CCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 125880 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 99068 0.66 0.929628
Target:  5'- aGGcCCGGGGCcGCCUcuucgugcuggGGCCUgucUGCg -3'
miRNA:   3'- -CCuGGCCCUGcUGGG-----------CCGGAaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 29502 0.66 0.929628
Target:  5'- cGGCCGcGGGCGGCgcuUCGGCCg------ -3'
miRNA:   3'- cCUGGC-CCUGCUG---GGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 125910 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 34087 0.66 0.929628
Target:  5'- cGGccCCGGGGcCGGCCuCGGCgg--GUGCg -3'
miRNA:   3'- -CCu-GGCCCU-GCUGG-GCCGgaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 23067 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 23097 0.66 0.929628
Target:  5'- uGGGCUgGGGugGGCUgGGCUgggGUGg -3'
miRNA:   3'- -CCUGG-CCCugCUGGgCCGGaaaUAUg -5'
6617 3' -55.3 NC_001847.1 + 66731 0.66 0.929628
Target:  5'- -uGCCGGuuGGCGACCCuuaccuGGCCga-GUGCu -3'
miRNA:   3'- ccUGGCC--CUGCUGGG------CCGGaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 107252 0.66 0.929628
Target:  5'- cGGCCGGGccgGCGACCUcGCCa------ -3'
miRNA:   3'- cCUGGCCC---UGCUGGGcCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 118863 0.66 0.929628
Target:  5'- aGACCGGGuuGgauuACCCGGgCgcucgGUGCa -3'
miRNA:   3'- cCUGGCCCugC----UGGGCCgGaaa--UAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.