miRNA display CGI


Results 1 - 20 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 11975 0.66 0.492501
Target:  5'- aGGCgugccguuGGCGggGGCuCGCGCaaacCCGCu-- -3'
miRNA:   3'- gCCG--------CCGCuuCCG-GCGCGc---GGCGcug -5'
6617 5' -65.4 NC_001847.1 + 66211 0.66 0.492501
Target:  5'- aGGCGcagcccGCGGccGCCGCGCcgaaccucagcGCgGCGGCg -3'
miRNA:   3'- gCCGC------CGCUucCGGCGCG-----------CGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 14443 0.66 0.492501
Target:  5'- uGGCGcCGAGcgcgcGGCCGCGCuGCU-CGGCg -3'
miRNA:   3'- gCCGCcGCUU-----CCGGCGCG-CGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 25195 0.66 0.492501
Target:  5'- uGGCcaGCGAGccCCGCGCGCgGcCGGCa -3'
miRNA:   3'- gCCGc-CGCUUccGGCGCGCGgC-GCUG- -5'
6617 5' -65.4 NC_001847.1 + 27890 0.66 0.492501
Target:  5'- uGGaUGGCGAGgucgccggcccGGCCGCGCuugcggagGCCaggGCGGCc -3'
miRNA:   3'- gCC-GCCGCUU-----------CCGGCGCG--------CGG---CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 34789 0.66 0.492501
Target:  5'- gCGGCGcGCGGcuacgacccgcGGCCGC-UGgCGCGGCa -3'
miRNA:   3'- -GCCGC-CGCUu----------CCGGCGcGCgGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 48944 0.66 0.492501
Target:  5'- aGGCGcGCGAcuGGaCCGCccccgGUGCCGUcaGACg -3'
miRNA:   3'- gCCGC-CGCUu-CC-GGCG-----CGCGGCG--CUG- -5'
6617 5' -65.4 NC_001847.1 + 53938 0.66 0.492501
Target:  5'- aCGGCGGCucugugcgcgaGgcGGCCGCcucuGUGCU-CGACg -3'
miRNA:   3'- -GCCGCCG-----------CuuCCGGCG----CGCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 89776 0.66 0.492501
Target:  5'- gCGcCGGCGuacGAGGCCGUcaucGCGCUgGCGAa -3'
miRNA:   3'- -GCcGCCGC---UUCCGGCG----CGCGG-CGCUg -5'
6617 5' -65.4 NC_001847.1 + 24430 0.66 0.492501
Target:  5'- aGaGCGGCaaagucaAAGGCgaGCGCGCCGCc-- -3'
miRNA:   3'- gC-CGCCGc------UUCCGg-CGCGCGGCGcug -5'
6617 5' -65.4 NC_001847.1 + 71490 0.66 0.492501
Target:  5'- cCGGCaacGGUGgcGGCgGUGCGCgGUGcCu -3'
miRNA:   3'- -GCCG---CCGCuuCCGgCGCGCGgCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 12895 0.66 0.492501
Target:  5'- aCGGCaGCacgcgGAAGcgcgcGCCGUGcCGCCGCGGg -3'
miRNA:   3'- -GCCGcCG-----CUUC-----CGGCGC-GCGGCGCUg -5'
6617 5' -65.4 NC_001847.1 + 12673 0.66 0.492501
Target:  5'- aCGGCGacGCGAAGcugcaCUGCGCGUCgGCGGg -3'
miRNA:   3'- -GCCGC--CGCUUCc----GGCGCGCGG-CGCUg -5'
6617 5' -65.4 NC_001847.1 + 48079 0.66 0.492501
Target:  5'- gCGGgGGCGcacGCCGCGCggaaGCUGCaGCa -3'
miRNA:   3'- -GCCgCCGCuucCGGCGCG----CGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 75294 0.66 0.492501
Target:  5'- uCGGCGaccGCGccuGGCCgGUGCcCCGCGAg -3'
miRNA:   3'- -GCCGC---CGCuu-CCGG-CGCGcGGCGCUg -5'
6617 5' -65.4 NC_001847.1 + 98892 0.66 0.492501
Target:  5'- gGGCGGCccAGGCCGgGaGCU-CGGCa -3'
miRNA:   3'- gCCGCCGcuUCCGGCgCgCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 34357 0.66 0.492501
Target:  5'- cCGGCcgGGagaGAAGGCCaGCgaGCGCCauggcgcgggGCGACc -3'
miRNA:   3'- -GCCG--CCg--CUUCCGG-CG--CGCGG----------CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 42390 0.66 0.492501
Target:  5'- gCGGCugcacGGCGAGGuccuggccuGCCaCGCGCUGCG-Cg -3'
miRNA:   3'- -GCCG-----CCGCUUC---------CGGcGCGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 77830 0.66 0.492501
Target:  5'- uGGCGGUGcAGGGCucacgagcuCGCG-GCC-CGGCa -3'
miRNA:   3'- gCCGCCGC-UUCCG---------GCGCgCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 97551 0.66 0.492501
Target:  5'- gGGcCGGCccccGGCCGcCGCaGCCGCaGCg -3'
miRNA:   3'- gCC-GCCGcuu-CCGGC-GCG-CGGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.