miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6644 5' -51.8 NC_001847.1 + 60119 0.66 0.988487
Target:  5'- uCGCGCG-GCGUgAGCGAGggggCGUcGGc -3'
miRNA:   3'- -GUGUGCuUGCAgUCGCUCaa--GCA-CCu -5'
6644 5' -51.8 NC_001847.1 + 12018 0.66 0.988487
Target:  5'- -uCugGGGCGcCGGCGAGgUCGUaGGc -3'
miRNA:   3'- guGugCUUGCaGUCGCUCaAGCA-CCu -5'
6644 5' -51.8 NC_001847.1 + 3813 0.66 0.988487
Target:  5'- gGCACgGGGCGUCGgccGCGAG--CGUGGc -3'
miRNA:   3'- gUGUG-CUUGCAGU---CGCUCaaGCACCu -5'
6644 5' -51.8 NC_001847.1 + 33505 0.66 0.986942
Target:  5'- gGCGCGGGCGgCGGCGGGcgccgcCGcGGAg -3'
miRNA:   3'- gUGUGCUUGCaGUCGCUCaa----GCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 15323 0.66 0.985243
Target:  5'- -cCGCGGGCG-UAGCGGGggCGggcgGGGg -3'
miRNA:   3'- guGUGCUUGCaGUCGCUCaaGCa---CCU- -5'
6644 5' -51.8 NC_001847.1 + 102894 0.66 0.982787
Target:  5'- gCACGCGucuGCGUCAGCGGcuaUCGacgccgcgugcgccUGGAc -3'
miRNA:   3'- -GUGUGCu--UGCAGUCGCUca-AGC--------------ACCU- -5'
6644 5' -51.8 NC_001847.1 + 81846 0.66 0.981343
Target:  5'- aGCGCGuACGUCAGCGg---CGUGaGGc -3'
miRNA:   3'- gUGUGCuUGCAGUCGCucaaGCAC-CU- -5'
6644 5' -51.8 NC_001847.1 + 46329 0.66 0.980697
Target:  5'- aGCACGGccgcccgcggggccGCGUCGGCGGcaUCGgGGGg -3'
miRNA:   3'- gUGUGCU--------------UGCAGUCGCUcaAGCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 32006 0.66 0.980697
Target:  5'- gACGCGGGCGUggagcgcgaagcucCGGCGGGgcgCGgGGAc -3'
miRNA:   3'- gUGUGCUUGCA--------------GUCGCUCaa-GCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 134819 0.66 0.980697
Target:  5'- gACGCGGGCGUggagcgcgaagcucCGGCGGGgcgCGgGGAc -3'
miRNA:   3'- gUGUGCUUGCA--------------GUCGCUCaa-GCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 35225 0.66 0.979126
Target:  5'- gCGCGCGGACGUgcugcaggcggcCGGCGGGcgCGcggcGGAg -3'
miRNA:   3'- -GUGUGCUUGCA------------GUCGCUCaaGCa---CCU- -5'
6644 5' -51.8 NC_001847.1 + 67326 0.67 0.976718
Target:  5'- cCGCGCGGACGccgcggcuuugUCGGCGAaucCGUGGc -3'
miRNA:   3'- -GUGUGCUUGC-----------AGUCGCUcaaGCACCu -5'
6644 5' -51.8 NC_001847.1 + 77252 0.67 0.971303
Target:  5'- uCGCGCGGGCGcUGGCGGGcgacacccUCGUGGc -3'
miRNA:   3'- -GUGUGCUUGCaGUCGCUCa-------AGCACCu -5'
6644 5' -51.8 NC_001847.1 + 34298 0.67 0.96828
Target:  5'- -uCGCGGcCGUCAGCGAGgcUUCG-GGc -3'
miRNA:   3'- guGUGCUuGCAGUCGCUC--AAGCaCCu -5'
6644 5' -51.8 NC_001847.1 + 77795 0.67 0.96828
Target:  5'- aGCGCGGAUGUCuG-GAGgaCGUGGc -3'
miRNA:   3'- gUGUGCUUGCAGuCgCUCaaGCACCu -5'
6644 5' -51.8 NC_001847.1 + 28284 0.67 0.965037
Target:  5'- gCACGCGAggACG-CGGCGug--CGUGGGu -3'
miRNA:   3'- -GUGUGCU--UGCaGUCGCucaaGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 82460 0.67 0.965037
Target:  5'- gCGCACGGccGCGUgCGGCGuGc-CGUGGGa -3'
miRNA:   3'- -GUGUGCU--UGCA-GUCGCuCaaGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 64177 0.68 0.961569
Target:  5'- uGCGCGGACGgggCGGCGGGcgCGacgcUGGc -3'
miRNA:   3'- gUGUGCUUGCa--GUCGCUCaaGC----ACCu -5'
6644 5' -51.8 NC_001847.1 + 52481 0.68 0.961209
Target:  5'- aGCACGAGCG-CGGCGcgccgcgcucgcgGGUUCG-GGu -3'
miRNA:   3'- gUGUGCUUGCaGUCGC-------------UCAAGCaCCu -5'
6644 5' -51.8 NC_001847.1 + 46887 0.68 0.957869
Target:  5'- aCGCguGCGAGCGccgcuUCAGCGAGgcuUCGgGGGg -3'
miRNA:   3'- -GUG--UGCUUGC-----AGUCGCUCa--AGCaCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.