miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 3' -61.3 NC_001847.1 + 134767 0.71 0.315958
Target:  5'- cGG-UCCGGCGCGCgGCgCGCgGGGCg- -3'
miRNA:   3'- cCCaAGGUCGUGCG-CG-GCGgUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 134647 0.67 0.548773
Target:  5'- gGGGggUUGGCGCGCgGCCGCCccGCc- -3'
miRNA:   3'- -CCCaaGGUCGUGCG-CGGCGGucCGaa -5'
6651 3' -61.3 NC_001847.1 + 134537 0.69 0.453952
Target:  5'- uGGUaCaCGGgGCGCGUCGUCGGGCa- -3'
miRNA:   3'- cCCAaG-GUCgUGCGCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 134265 0.67 0.568555
Target:  5'- cGGccCCGGCGCGgGCCGCCgccgcgcguggAGGUg- -3'
miRNA:   3'- cCCaaGGUCGUGCgCGGCGG-----------UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 134218 0.66 0.628732
Target:  5'- cGGGcUCgGGCuucccgGCGCCGgCGGGCg- -3'
miRNA:   3'- -CCCaAGgUCGug----CGCGGCgGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 134190 0.68 0.519527
Target:  5'- cGGGUgCCGGCGCaGuCGUCcCCGGGCg- -3'
miRNA:   3'- -CCCAaGGUCGUG-C-GCGGcGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 134146 0.69 0.436046
Target:  5'- uGGUgg-AGCGCGUGCCGCCGccGGCg- -3'
miRNA:   3'- cCCAaggUCGUGCGCGGCGGU--CCGaa -5'
6651 3' -61.3 NC_001847.1 + 133852 0.69 0.427247
Target:  5'- aGGGcgaggcggCCAGCcacCGCGCCGCCAaccgcugggGGCUc -3'
miRNA:   3'- -CCCaa------GGUCGu--GCGCGGCGGU---------CCGAa -5'
6651 3' -61.3 NC_001847.1 + 133766 0.68 0.509912
Target:  5'- -----gCAGCGCGUGCUGCCGGcGCUc -3'
miRNA:   3'- cccaagGUCGUGCGCGGCGGUC-CGAa -5'
6651 3' -61.3 NC_001847.1 + 133616 0.66 0.598536
Target:  5'- cGGGcgCCuucGCGCGCGCCG--AGGCc- -3'
miRNA:   3'- -CCCaaGGu--CGUGCGCGGCggUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 133569 0.66 0.638812
Target:  5'- cGGcGcgCUGGCGCGCGCCGUgCuGGCc- -3'
miRNA:   3'- -CC-CaaGGUCGUGCGCGGCG-GuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 133242 0.69 0.453952
Target:  5'- cGGGcUCUcGCACGCGCucgcggCGCUGGGCa- -3'
miRNA:   3'- -CCCaAGGuCGUGCGCG------GCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 133173 0.69 0.463054
Target:  5'- cGGGgaggcgCUGGCG-GCGCCGCCcGGCg- -3'
miRNA:   3'- -CCCaa----GGUCGUgCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132879 0.66 0.588509
Target:  5'- cGGcUUCCGcCGCGUGCCGCCcgGGGaCUa -3'
miRNA:   3'- cCC-AAGGUcGUGCGCGGCGG--UCC-GAa -5'
6651 3' -61.3 NC_001847.1 + 132821 0.72 0.281878
Target:  5'- cGGGUUCCGcGCagcggGCGUGUCGCCAugGGCa- -3'
miRNA:   3'- -CCCAAGGU-CG-----UGCGCGGCGGU--CCGaa -5'
6651 3' -61.3 NC_001847.1 + 132604 0.68 0.519527
Target:  5'- cGGc-CCGGCGgcgggaGCGCCGCCGGGUc- -3'
miRNA:   3'- cCCaaGGUCGUg-----CGCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132483 0.66 0.598536
Target:  5'- ----gCCGGC-CGaGCCGCCGGGCg- -3'
miRNA:   3'- cccaaGGUCGuGCgCGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132384 0.75 0.201977
Target:  5'- gGGGcgCCGGCGCcgGCGCCGCCgcgccGGGCc- -3'
miRNA:   3'- -CCCaaGGUCGUG--CGCGGCGG-----UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132296 0.67 0.548773
Target:  5'- uGGGcgCUGGCGCGCGCgcuguucagccCGCC-GGCg- -3'
miRNA:   3'- -CCCaaGGUCGUGCGCG-----------GCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 132161 0.69 0.453952
Target:  5'- cGGcUCCAGCGCGCGgccCCGgCGGcGCUg -3'
miRNA:   3'- cCCaAGGUCGUGCGC---GGCgGUC-CGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.