miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 5' -54.1 NC_001847.1 + 134955 0.67 0.922134
Target:  5'- gCGGGggCGGgGGCGGggGCCCCgggggCCAa -3'
miRNA:   3'- gGUUUaaGUCgCCGCUuaCGGGG-----GGU- -5'
6651 5' -54.1 NC_001847.1 + 134644 0.66 0.92766
Target:  5'- aCAGGggggUUGGCGcGCGGccGCCCCgCCGc -3'
miRNA:   3'- gGUUUa---AGUCGC-CGCUuaCGGGG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 134331 0.67 0.910336
Target:  5'- uCCucg-UCcGCGGCGuc-GUCCCCCGc -3'
miRNA:   3'- -GGuuuaAGuCGCCGCuuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 134159 0.74 0.559055
Target:  5'- gCCGccgcCGGCGGCGGAaGCCCCgCCGg -3'
miRNA:   3'- -GGUuuaaGUCGCCGCUUaCGGGG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 130860 0.68 0.861451
Target:  5'- gCCGAgg-CGGgGGCGGc-GCCCCUCAa -3'
miRNA:   3'- -GGUUuaaGUCgCCGCUuaCGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 129400 0.68 0.890797
Target:  5'- -uGAGcUUGGCGGCGAAccGCCCCgCGg -3'
miRNA:   3'- ggUUUaAGUCGCCGCUUa-CGGGGgGU- -5'
6651 5' -54.1 NC_001847.1 + 127062 0.78 0.362855
Target:  5'- gCCGAucUCGccGCGGCG-GUGCCCCCCu -3'
miRNA:   3'- -GGUUuaAGU--CGCCGCuUACGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 126511 0.71 0.724838
Target:  5'- cCCGAGUccgCAGCGGCc---GCuCCCCCGg -3'
miRNA:   3'- -GGUUUAa--GUCGCCGcuuaCG-GGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 124776 0.72 0.682867
Target:  5'- aCCGGGgggggcuUUCGGCGGCG---GCCCCCUc -3'
miRNA:   3'- -GGUUU-------AAGUCGCCGCuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 123166 0.7 0.774057
Target:  5'- uCCGGAgacggcgCGGCGGCGcucagGCCgCCCAu -3'
miRNA:   3'- -GGUUUaa-----GUCGCCGCuua--CGGgGGGU- -5'
6651 5' -54.1 NC_001847.1 + 120021 0.66 0.92766
Target:  5'- cCCGGGUg-AGCGGCcuagGCCCUCCc -3'
miRNA:   3'- -GGUUUAagUCGCCGcuuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 119644 0.7 0.79103
Target:  5'- aCCGAGgacggggCAGCcgGGCGGGagggcaacggcgGCCCCCCAg -3'
miRNA:   3'- -GGUUUaa-----GUCG--CCGCUUa-----------CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 117328 0.69 0.811112
Target:  5'- ------cUAGCGGCGGGgggcggccucGCCCCCCGc -3'
miRNA:   3'- gguuuaaGUCGCCGCUUa---------CGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 115268 0.67 0.897552
Target:  5'- gCCGGuuggCGGUGGCGGGcuaagccgGCgCCCCCGg -3'
miRNA:   3'- -GGUUuaa-GUCGCCGCUUa-------CG-GGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 115230 0.69 0.837156
Target:  5'- gCAGG-UCGGCGGCGAc-GCCCUCg- -3'
miRNA:   3'- gGUUUaAGUCGCCGCUuaCGGGGGgu -5'
6651 5' -54.1 NC_001847.1 + 113548 0.68 0.883805
Target:  5'- gCGAGUUUagGGgGGCGGGgccccgcgGCCCCCUc -3'
miRNA:   3'- gGUUUAAG--UCgCCGCUUa-------CGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 113381 0.71 0.744844
Target:  5'- gCCGGGccCGGCGcCGGcgGCCCCCCc -3'
miRNA:   3'- -GGUUUaaGUCGCcGCUuaCGGGGGGu -5'
6651 5' -54.1 NC_001847.1 + 113166 0.67 0.897552
Target:  5'- ------aCGGCGGCGAGgggGCCgCCgCCGa -3'
miRNA:   3'- gguuuaaGUCGCCGCUUa--CGG-GG-GGU- -5'
6651 5' -54.1 NC_001847.1 + 112267 0.72 0.673533
Target:  5'- gCAGAacccCGGCGGCGA---CCCCCCAg -3'
miRNA:   3'- gGUUUaa--GUCGCCGCUuacGGGGGGU- -5'
6651 5' -54.1 NC_001847.1 + 108741 0.7 0.764439
Target:  5'- gCGGAUgggCGGCGGaCGAcggGCCCgCCCGc -3'
miRNA:   3'- gGUUUAa--GUCGCC-GCUua-CGGG-GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.