miRNA display CGI


Results 1 - 20 of 473 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6652 5' -51.5 NC_001847.1 + 122227 0.66 0.989229
Target:  5'- aCGcGCGCC-CCCGCGGcgGcacg-GCg -3'
miRNA:   3'- -GCuCGUGGcGGGCGCCuaUuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 13844 0.66 0.989229
Target:  5'- gCGAGgGCaCGCUCGCGcGGUAcagccUGCu -3'
miRNA:   3'- -GCUCgUG-GCGGGCGC-CUAUuuuu-ACG- -5'
6652 5' -51.5 NC_001847.1 + 134830 0.66 0.989229
Target:  5'- gGAGCGCgaaGCuCCGgCGGGgcgcgGGGAcgGCg -3'
miRNA:   3'- gCUCGUGg--CG-GGC-GCCUa----UUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 87417 0.66 0.989229
Target:  5'- gGGGCcCCGCCCGCcgcgcucgAAGAGcUGCu -3'
miRNA:   3'- gCUCGuGGCGGGCGccua----UUUUU-ACG- -5'
6652 5' -51.5 NC_001847.1 + 122151 0.66 0.989229
Target:  5'- aGGGCGCCGCgCG-GGAcGAGGAg-- -3'
miRNA:   3'- gCUCGUGGCGgGCgCCUaUUUUUacg -5'
6652 5' -51.5 NC_001847.1 + 97013 0.66 0.989229
Target:  5'- -cGGCGCUGgCCGCGGGgg-----GCa -3'
miRNA:   3'- gcUCGUGGCgGGCGCCUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 81611 0.66 0.989229
Target:  5'- aCGAG-GCCGCCggCGUGGccGUAAAGAccuuUGCg -3'
miRNA:   3'- -GCUCgUGGCGG--GCGCC--UAUUUUU----ACG- -5'
6652 5' -51.5 NC_001847.1 + 40737 0.66 0.989229
Target:  5'- aCGGGCAUgGCCCcgucGCGGuacugcgccgAAucGUGCg -3'
miRNA:   3'- -GCUCGUGgCGGG----CGCCua--------UUuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 43898 0.66 0.989229
Target:  5'- uGuGCGCCGCgUGCGGcUGcaggcggaccccGAAGUGUu -3'
miRNA:   3'- gCuCGUGGCGgGCGCCuAU------------UUUUACG- -5'
6652 5' -51.5 NC_001847.1 + 35954 0.66 0.989229
Target:  5'- uGGGCGCUGCUgGCGGcgc----UGCu -3'
miRNA:   3'- gCUCGUGGCGGgCGCCuauuuuuACG- -5'
6652 5' -51.5 NC_001847.1 + 32017 0.66 0.989229
Target:  5'- gGAGCGCgaaGCuCCGgCGGGgcgcgGGGAcgGCg -3'
miRNA:   3'- gCUCGUGg--CG-GGC-GCCUa----UUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 106663 0.66 0.989229
Target:  5'- -cGGCGCCGCggcguCCGCGGcgcgucGUGCc -3'
miRNA:   3'- gcUCGUGGCG-----GGCGCCuauuuuUACG- -5'
6652 5' -51.5 NC_001847.1 + 101450 0.66 0.989229
Target:  5'- gGGGCgcggaaacuGCCGCCgCGCGGccgcaAGGGcgGCg -3'
miRNA:   3'- gCUCG---------UGGCGG-GCGCCua---UUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 17347 0.66 0.989229
Target:  5'- cCGAGCccucgguCCaGCCCGCagGGGUAuuuguGGAUGUc -3'
miRNA:   3'- -GCUCGu------GG-CGGGCG--CCUAUu----UUUACG- -5'
6652 5' -51.5 NC_001847.1 + 85285 0.66 0.989229
Target:  5'- aGAGUGCgGCguuguagaagggCCGCGGAUAcgcAAGcUGCu -3'
miRNA:   3'- gCUCGUGgCG------------GGCGCCUAU---UUUuACG- -5'
6652 5' -51.5 NC_001847.1 + 86351 0.66 0.989229
Target:  5'- -uGGCGCCggcgaggcGCCCGCaGAcGAGGcgGCg -3'
miRNA:   3'- gcUCGUGG--------CGGGCGcCUaUUUUuaCG- -5'
6652 5' -51.5 NC_001847.1 + 74630 0.66 0.988945
Target:  5'- uGGGCAgCGCCuCGCGcGAggcggg-GCa -3'
miRNA:   3'- gCUCGUgGCGG-GCGC-CUauuuuuaCG- -5'
6652 5' -51.5 NC_001847.1 + 91714 0.66 0.988655
Target:  5'- uCGGGCACCGCgCGaCGcGAggcccagcUGCa -3'
miRNA:   3'- -GCUCGUGGCGgGC-GC-CUauuuuu--ACG- -5'
6652 5' -51.5 NC_001847.1 + 120205 0.66 0.988209
Target:  5'- gCGAGCGgCGCCCGCucgcagccuuGUGUa -3'
miRNA:   3'- -GCUCGUgGCGGGCGccuauuuu--UACG- -5'
6652 5' -51.5 NC_001847.1 + 100546 0.66 0.98775
Target:  5'- uGGGCggggaGCCGgCCGCGGcgAuuAuUGCc -3'
miRNA:   3'- gCUCG-----UGGCgGGCGCCuaUuuUuACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.