Results 1 - 20 of 473 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6652 | 5' | -51.5 | NC_001847.1 | + | 99036 | 1.12 | 0.004745 |
Target: 5'- gCGAGCACCGCCCGCGGAUAAAAAUGCc -3' miRNA: 3'- -GCUCGUGGCGGGCGCCUAUUUUUACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 53170 | 0.9 | 0.107085 |
Target: 5'- cCGAGCACCGCCCGCGuGAUGAGc--GCg -3' miRNA: 3'- -GCUCGUGGCGGGCGC-CUAUUUuuaCG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 29466 | 0.87 | 0.168789 |
Target: 5'- cCGaAGCGCCGCCCGCGGccGAGGcgGCa -3' miRNA: 3'- -GC-UCGUGGCGGGCGCCuaUUUUuaCG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 105646 | 0.86 | 0.207695 |
Target: 5'- cCGaAGCGCCGCCCGCGGccgGAGAgcGUGCc -3' miRNA: 3'- -GC-UCGUGGCGGGCGCCua-UUUU--UACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 4313 | 0.84 | 0.254111 |
Target: 5'- uCGcGCGCCGCCUGCGGGUA---GUGCu -3' miRNA: 3'- -GCuCGUGGCGGGCGCCUAUuuuUACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 18753 | 0.84 | 0.260477 |
Target: 5'- aGAGCGCCGCcgCCGCGGcUAAGGcgGCg -3' miRNA: 3'- gCUCGUGGCG--GGCGCCuAUUUUuaCG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 102209 | 0.83 | 0.301425 |
Target: 5'- gCGGGCACCGCgCGCGGGUcgucgggcGGGAcgGCg -3' miRNA: 3'- -GCUCGUGGCGgGCGCCUA--------UUUUuaCG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 4541 | 0.82 | 0.339205 |
Target: 5'- -cGGCgGCCGCCCGCGGGUGGcGcgGCg -3' miRNA: 3'- gcUCG-UGGCGGGCGCCUAUUuUuaCG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 126549 | 0.81 | 0.347162 |
Target: 5'- cCGAGCGCCGCCCcugGCGGGgccuGAuuUGCc -3' miRNA: 3'- -GCUCGUGGCGGG---CGCCUau--UUuuACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 23736 | 0.81 | 0.347162 |
Target: 5'- cCGAGCGCCGCCCcugGCGGGgccuGAuuUGCc -3' miRNA: 3'- -GCUCGUGGCGGG---CGCCUau--UUuuACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 82237 | 0.8 | 0.406516 |
Target: 5'- cCGAGcCGCUGCCCGCGGAccUAGGAcugGCc -3' miRNA: 3'- -GCUC-GUGGCGGGCGCCU--AUUUUua-CG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 69418 | 0.8 | 0.424607 |
Target: 5'- uCGAGCGCCGCCCcgGCGGGcucuGGGAUGa -3' miRNA: 3'- -GCUCGUGGCGGG--CGCCUau--UUUUACg -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 38200 | 0.79 | 0.439421 |
Target: 5'- aGAGCgccuGCCGCCCGCGGAggcccggGCc -3' miRNA: 3'- gCUCG----UGGCGGGCGCCUauuuuuaCG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 83024 | 0.78 | 0.501435 |
Target: 5'- gGGGCGCCgccgGCCCGCGGccgcuAGUGCg -3' miRNA: 3'- gCUCGUGG----CGGGCGCCuauuuUUACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 18198 | 0.78 | 0.491479 |
Target: 5'- gGAGCACCGCCaggcaGCGGuacgGGcuGUGCg -3' miRNA: 3'- gCUCGUGGCGGg----CGCCua--UUuuUACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 99529 | 0.78 | 0.521605 |
Target: 5'- -cAGCGCCGCCgGCGGcgGcguGAUGCg -3' miRNA: 3'- gcUCGUGGCGGgCGCCuaUuu-UUACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 45511 | 0.77 | 0.583764 |
Target: 5'- gCGGGCGCCGCCgccgggcggCGCGGAcGGGGccGUGCc -3' miRNA: 3'- -GCUCGUGGCGG---------GCGCCUaUUUU--UACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 124865 | 0.77 | 0.542083 |
Target: 5'- gCGAGCGCgCgGCCCGCGGuuuuu-AUGCg -3' miRNA: 3'- -GCUCGUG-G-CGGGCGCCuauuuuUACG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 8081 | 0.77 | 0.583764 |
Target: 5'- gGGGCACCG-CCGCGGcgAGAucgGCg -3' miRNA: 3'- gCUCGUGGCgGGCGCCuaUUUuuaCG- -5' |
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6652 | 5' | -51.5 | NC_001847.1 | + | 57403 | 0.77 | 0.542083 |
Target: 5'- gCGGGUcCCGCUCGCGGAgcUGGAGGUGa -3' miRNA: 3'- -GCUCGuGGCGGGCGCCU--AUUUUUACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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