miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6655 3' -57.6 NC_001847.1 + 91087 0.66 0.825954
Target:  5'- --aGCUGcacgaacagggcGGCCCCGACGcGCGcCUCg- -3'
miRNA:   3'- ccaCGAC------------UCGGGGCUGC-UGCuGAGaa -5'
6655 3' -57.6 NC_001847.1 + 128638 0.66 0.825954
Target:  5'- --gGCUGAGCgCgCCGGCGACGccGCUa-- -3'
miRNA:   3'- ccaCGACUCG-G-GGCUGCUGC--UGAgaa -5'
6655 3' -57.6 NC_001847.1 + 34109 0.66 0.825954
Target:  5'- gGGUGCgcaaauUGGGaCCCCGgccGCGGCGGCg--- -3'
miRNA:   3'- -CCACG------ACUC-GGGGC---UGCUGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 26552 0.66 0.817418
Target:  5'- -aUGCaaaUGAGCCCCGACaGCcGCUCc- -3'
miRNA:   3'- ccACG---ACUCGGGGCUGcUGcUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 129365 0.66 0.817418
Target:  5'- -aUGCaaaUGAGCCCCGACaGCcGCUCc- -3'
miRNA:   3'- ccACG---ACUCGGGGCUGcUGcUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 88477 0.66 0.816555
Target:  5'- cGUGCUGcucGCCCUacucugccgaaugGACGACGGCggCUg -3'
miRNA:   3'- cCACGACu--CGGGG-------------CUGCUGCUGa-GAa -5'
6655 3' -57.6 NC_001847.1 + 105121 0.66 0.814824
Target:  5'- cGGgcgGCaUGGGCCCCaGcacgcgggcgggcaGCGGCGGCUCc- -3'
miRNA:   3'- -CCa--CG-ACUCGGGG-C--------------UGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 2308 0.66 0.814824
Target:  5'- cGGgcgGCaUGGGCCCCaGcacgcgggcgggcaGCGGCGGCUCc- -3'
miRNA:   3'- -CCa--CG-ACUCGGGG-C--------------UGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 88874 0.66 0.79985
Target:  5'- cGGUGCgcgcGGCggCGGCGGCGGCUCc- -3'
miRNA:   3'- -CCACGac--UCGggGCUGCUGCUGAGaa -5'
6655 3' -57.6 NC_001847.1 + 116073 0.66 0.79985
Target:  5'- --aGCgGGGCCgaCGACGGCGACUg-- -3'
miRNA:   3'- ccaCGaCUCGGg-GCUGCUGCUGAgaa -5'
6655 3' -57.6 NC_001847.1 + 49902 0.67 0.781678
Target:  5'- cGUGCUGGGCCCgGccGCGGUGGCgCUg -3'
miRNA:   3'- cCACGACUCGGGgC--UGCUGCUGaGAa -5'
6655 3' -57.6 NC_001847.1 + 57687 0.67 0.772388
Target:  5'- uGGUGCUGGGCgCCG-CGGgugcCGcGCUCUc -3'
miRNA:   3'- -CCACGACUCGgGGCuGCU----GC-UGAGAa -5'
6655 3' -57.6 NC_001847.1 + 55609 0.67 0.772388
Target:  5'- --aGCccccccGGCCCCGACGGCGACg--- -3'
miRNA:   3'- ccaCGac----UCGGGGCUGCUGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 40163 0.67 0.762972
Target:  5'- cGGUGaCUGGGCguCCUGGuCG-CGGCUCUg -3'
miRNA:   3'- -CCAC-GACUCG--GGGCU-GCuGCUGAGAa -5'
6655 3' -57.6 NC_001847.1 + 118500 0.67 0.762972
Target:  5'- aGGcGCgGGGCCCCGACGGCa------ -3'
miRNA:   3'- -CCaCGaCUCGGGGCUGCUGcugagaa -5'
6655 3' -57.6 NC_001847.1 + 120192 0.67 0.753441
Target:  5'- uGGUGCUG-GCCgCGcgaGCGGCGcccGCUCg- -3'
miRNA:   3'- -CCACGACuCGGgGC---UGCUGC---UGAGaa -5'
6655 3' -57.6 NC_001847.1 + 41646 0.67 0.743803
Target:  5'- gGGUGCgGAuccaCCCGACGcgcggcacGCGGCUCUUc -3'
miRNA:   3'- -CCACGaCUcg--GGGCUGC--------UGCUGAGAA- -5'
6655 3' -57.6 NC_001847.1 + 110625 0.68 0.734068
Target:  5'- cGUGCagcgcgcGAGCCCCGACGcccACGGCg--- -3'
miRNA:   3'- cCACGa------CUCGGGGCUGC---UGCUGagaa -5'
6655 3' -57.6 NC_001847.1 + 27858 0.68 0.724245
Target:  5'- cGUGC-GGGCCCUGugGGCcgcGCUCg- -3'
miRNA:   3'- cCACGaCUCGGGGCugCUGc--UGAGaa -5'
6655 3' -57.6 NC_001847.1 + 89285 0.68 0.724245
Target:  5'- --aGCUGAaCCCCGGCGGCGAa---- -3'
miRNA:   3'- ccaCGACUcGGGGCUGCUGCUgagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.