miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 5' -60 NC_001847.1 + 135013 0.66 0.680832
Target:  5'- -gAUGGCCGCGCAca-UGCUugGUGa -3'
miRNA:   3'- agUACCGGUGCGUccgGCGGugCACg -5'
6659 5' -60 NC_001847.1 + 134591 0.67 0.670833
Target:  5'- ---cGGCgCugGCGuccGCCGCCACGUuccccGCg -3'
miRNA:   3'- aguaCCG-GugCGUc--CGGCGGUGCA-----CG- -5'
6659 5' -60 NC_001847.1 + 134535 0.68 0.560533
Target:  5'- ---gGGCCGCGC--GCCGCUGCGgaGCg -3'
miRNA:   3'- aguaCCGGUGCGucCGGCGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 134265 0.79 0.139757
Target:  5'- ---cGGCCccgGCGCGGGCCGCCGCcgcgcguggagGUGCu -3'
miRNA:   3'- aguaCCGG---UGCGUCCGGCGGUG-----------CACG- -5'
6659 5' -60 NC_001847.1 + 134207 0.69 0.531093
Target:  5'- ---cGGCgCGCGCGGGCCGaggGCG-GCg -3'
miRNA:   3'- aguaCCG-GUGCGUCCGGCgg-UGCaCG- -5'
6659 5' -60 NC_001847.1 + 134093 0.68 0.560533
Target:  5'- cCAgGGCC-CGCGGGagaCGCU-CGUGCu -3'
miRNA:   3'- aGUaCCGGuGCGUCCg--GCGGuGCACG- -5'
6659 5' -60 NC_001847.1 + 134038 0.71 0.403207
Target:  5'- ---aGGCCGCgGCGGcGCCGCCcGCGgccGCg -3'
miRNA:   3'- aguaCCGGUG-CGUC-CGGCGG-UGCa--CG- -5'
6659 5' -60 NC_001847.1 + 134000 0.7 0.446739
Target:  5'- gCcgGaGCCGCGCgccgaGGcGCCGCCGCugGUGCu -3'
miRNA:   3'- aGuaC-CGGUGCG-----UC-CGGCGGUG--CACG- -5'
6659 5' -60 NC_001847.1 + 133801 0.83 0.073108
Target:  5'- aCAUGGCCGCGCAGGgCGCgGCGcugggGCu -3'
miRNA:   3'- aGUACCGGUGCGUCCgGCGgUGCa----CG- -5'
6659 5' -60 NC_001847.1 + 133723 0.74 0.29659
Target:  5'- ---aGuGCCugGCGGGCgcgggGCCGCGUGCc -3'
miRNA:   3'- aguaC-CGGugCGUCCGg----CGGUGCACG- -5'
6659 5' -60 NC_001847.1 + 133710 0.79 0.132828
Target:  5'- -gGUGGCCACGCgccuGGGcCCGCCACcgcgGUGCc -3'
miRNA:   3'- agUACCGGUGCG----UCC-GGCGGUG----CACG- -5'
6659 5' -60 NC_001847.1 + 133611 0.68 0.594412
Target:  5'- ---cGGCCcgggcgccuucgcgcGCGCcgAGGCCGCCuACGcGCg -3'
miRNA:   3'- aguaCCGG---------------UGCG--UCCGGCGG-UGCaCG- -5'
6659 5' -60 NC_001847.1 + 133476 0.72 0.361674
Target:  5'- --cUGGCCGCGCGacggcccGGCCGUcgggcaggcgCACGUGUa -3'
miRNA:   3'- aguACCGGUGCGU-------CCGGCG----------GUGCACG- -5'
6659 5' -60 NC_001847.1 + 133309 0.66 0.730075
Target:  5'- gCcgGGCgCugGaCGGGCgCGCCggACGUGa -3'
miRNA:   3'- aGuaCCG-GugC-GUCCG-GCGG--UGCACg -5'
6659 5' -60 NC_001847.1 + 133216 0.7 0.455756
Target:  5'- ---cGGCC-CGaguGGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCGGuGCgu-CCGGCGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 133178 0.68 0.57045
Target:  5'- ---aGGCgCugGCGGcGCCGCC-CG-GCg -3'
miRNA:   3'- aguaCCG-GugCGUC-CGGCGGuGCaCG- -5'
6659 5' -60 NC_001847.1 + 133110 0.73 0.310383
Target:  5'- aUCGUGGCCAC---GGCCGgCGcCGUGCu -3'
miRNA:   3'- -AGUACCGGUGcguCCGGCgGU-GCACG- -5'
6659 5' -60 NC_001847.1 + 133053 0.75 0.258078
Target:  5'- cCGccGCCGCGCGGGCC-CCGCGggGCg -3'
miRNA:   3'- aGUacCGGUGCGUCCGGcGGUGCa-CG- -5'
6659 5' -60 NC_001847.1 + 132976 0.68 0.560533
Target:  5'- ---aGGCgGCGCGGGCgcugcgaGaCCugGUGCu -3'
miRNA:   3'- aguaCCGgUGCGUCCGg------C-GGugCACG- -5'
6659 5' -60 NC_001847.1 + 132861 0.66 0.710563
Target:  5'- ---cGGCCccgccgccgACgGCGGcuuCCGCCGCGUGCc -3'
miRNA:   3'- aguaCCGG---------UG-CGUCc--GGCGGUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.