miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6664 5' -53.3 NC_001847.1 + 49394 0.66 0.966578
Target:  5'- aCCGgccUGGGuGGCGCggGGCuGAcgGCCAa -3'
miRNA:   3'- -GGC---ACUC-UUGCGa-CCGuCUuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 101134 0.66 0.966578
Target:  5'- aCUGUgGAGAuggGCGCgggGGCuGGG-GCCGGg -3'
miRNA:   3'- -GGCA-CUCU---UGCGa--CCGuCUUaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 32968 0.66 0.966578
Target:  5'- gCCGggGAGGccagagGCGCcggggcgGGCAGGGcgGCCGGa -3'
miRNA:   3'- -GGCa-CUCU------UGCGa------CCGUCUUa-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 19512 0.66 0.966578
Target:  5'- gUCGcGGGAucGCGCUugcGGCAGAAacggcaGCCGGa -3'
miRNA:   3'- -GGCaCUCU--UGCGA---CCGUCUUa-----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 7398 0.66 0.963223
Target:  5'- aCGUG-GcGCGCUcGGCAGAcgGCa-- -3'
miRNA:   3'- gGCACuCuUGCGA-CCGUCUuaCGguc -5'
6664 5' -53.3 NC_001847.1 + 97624 0.66 0.963223
Target:  5'- aCCGUcGAGggUGCguccaGGCGGcgcGCCAa -3'
miRNA:   3'- -GGCA-CUCuuGCGa----CCGUCuuaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 50848 0.66 0.963223
Target:  5'- gCCG-GGGGGCGCUGGU-GAugacGUCGGa -3'
miRNA:   3'- -GGCaCUCUUGCGACCGuCUua--CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 76165 0.66 0.95964
Target:  5'- gCCGUGuccuCGCUGcaGCAGGAggugaGCCAGc -3'
miRNA:   3'- -GGCACucuuGCGAC--CGUCUUa----CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 54536 0.66 0.95964
Target:  5'- gCCGUccGGGGGCGCagacGGCGGGGgcgGCgCGGa -3'
miRNA:   3'- -GGCA--CUCUUGCGa---CCGUCUUa--CG-GUC- -5'
6664 5' -53.3 NC_001847.1 + 104187 0.66 0.95964
Target:  5'- cCCGUc-GAGCGCcGGCAGcacgcgcUGCCGGu -3'
miRNA:   3'- -GGCAcuCUUGCGaCCGUCuu-----ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 1374 0.66 0.95964
Target:  5'- cCCGUc-GAGCGCcGGCAGcacgcgcUGCCGGu -3'
miRNA:   3'- -GGCAcuCUUGCGaCCGUCuu-----ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 24191 0.66 0.955824
Target:  5'- gCGUG---GCGCUGGUggccauGAcgGCCAGg -3'
miRNA:   3'- gGCACucuUGCGACCGu-----CUuaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 32928 0.66 0.955824
Target:  5'- aCGgGAGGAgGCcGGCGGcgggGCCGGg -3'
miRNA:   3'- gGCaCUCUUgCGaCCGUCuua-CGGUC- -5'
6664 5' -53.3 NC_001847.1 + 29076 0.66 0.955824
Target:  5'- gCGUGGcGGugGCgGGCGGcGUGCUg- -3'
miRNA:   3'- gGCACU-CUugCGaCCGUCuUACGGuc -5'
6664 5' -53.3 NC_001847.1 + 9915 0.66 0.947474
Target:  5'- gCCGccGAGuACGCccGGCAGGcggcUGCCAGc -3'
miRNA:   3'- -GGCa-CUCuUGCGa-CCGUCUu---ACGGUC- -5'
6664 5' -53.3 NC_001847.1 + 74168 0.66 0.947474
Target:  5'- gCCGUGGGcGCGCgcaGCGGGGacGCCAa -3'
miRNA:   3'- -GGCACUCuUGCGac-CGUCUUa-CGGUc -5'
6664 5' -53.3 NC_001847.1 + 71213 0.67 0.942932
Target:  5'- cCCGcGGccGCGCUGGguGAuggaguGUGCCAu -3'
miRNA:   3'- -GGCaCUcuUGCGACCguCU------UACGGUc -5'
6664 5' -53.3 NC_001847.1 + 74955 0.67 0.942464
Target:  5'- gCCGUuuauuuguuuauuGGGGACaGCgacggGGCGGGGcGCCAGg -3'
miRNA:   3'- -GGCA-------------CUCUUG-CGa----CCGUCUUaCGGUC- -5'
6664 5' -53.3 NC_001847.1 + 51369 0.67 0.933102
Target:  5'- aCCGUGAcgguGACGCUcGCGGAG-GCCGc -3'
miRNA:   3'- -GGCACUc---UUGCGAcCGUCUUaCGGUc -5'
6664 5' -53.3 NC_001847.1 + 102671 0.67 0.927811
Target:  5'- gCCGcGAGGGCgggggggcgggGCgggGGCAGGGcGCCGGg -3'
miRNA:   3'- -GGCaCUCUUG-----------CGa--CCGUCUUaCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.