miRNA display CGI


Results 41 - 60 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 73284 0.66 0.953514
Target:  5'- ----cGGGCGCuCGGCAggCGCGgCCUa -3'
miRNA:   3'- guauaUUCGCGcGCUGUa-GCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 103673 0.66 0.953514
Target:  5'- -----cGGCGCGaaaGACAcCGaCGCCCa -3'
miRNA:   3'- guauauUCGCGCg--CUGUaGC-GCGGGg -5'
6665 5' -53.9 NC_001847.1 + 123420 0.66 0.953514
Target:  5'- -----cAGCaGCGCGuCAUaCGUGCCgCCg -3'
miRNA:   3'- guauauUCG-CGCGCuGUA-GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 1094 0.66 0.953514
Target:  5'- ----cGGGCGcCGCGGCcgCgggcgGCGCCgCCg -3'
miRNA:   3'- guauaUUCGC-GCGCUGuaG-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 3813 0.66 0.953514
Target:  5'- ----cGGGCG-GCGGCggCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 31522 0.66 0.953514
Target:  5'- ------cGUcCGCGGCGUCGUcCCCCg -3'
miRNA:   3'- guauauuCGcGCGCUGUAGCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 52254 0.66 0.953514
Target:  5'- ------cGCGcCGCGGCuuggcugcggCGCGCCCg -3'
miRNA:   3'- guauauuCGC-GCGCUGua--------GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 117427 0.66 0.953514
Target:  5'- -------uCGCGCGGC--UGCGCCCUg -3'
miRNA:   3'- guauauucGCGCGCUGuaGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 58247 0.66 0.953514
Target:  5'- -----cGGCGCGCGAC--CGCcCUCCg -3'
miRNA:   3'- guauauUCGCGCGCUGuaGCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 106626 0.66 0.953514
Target:  5'- ----cGGGCG-GCGGCggCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 79408 0.66 0.953514
Target:  5'- ---cUGAGCGCGUacuagGACcgcCGUGCCCg -3'
miRNA:   3'- guauAUUCGCGCG-----CUGua-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 134335 0.66 0.953514
Target:  5'- ------cGUcCGCGGCGUCGUcCCCCg -3'
miRNA:   3'- guauauuCGcGCGCUGUAGCGcGGGG- -5'
6665 5' -53.9 NC_001847.1 + 72154 0.66 0.953514
Target:  5'- --cAUGGGCGUGCacuacGACcgCGUGUaCCCg -3'
miRNA:   3'- guaUAUUCGCGCG-----CUGuaGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 51982 0.66 0.953514
Target:  5'- ---cUGGGUGCGcCGGCGcaucgcggaCGCGCCCg -3'
miRNA:   3'- guauAUUCGCGC-GCUGUa--------GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 40545 0.66 0.953514
Target:  5'- ------cGUGCuGCGGCAgCGCGCCgCu -3'
miRNA:   3'- guauauuCGCG-CGCUGUaGCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 69503 0.66 0.953514
Target:  5'- gCGUAcacGGCGgaucucguuUGUGACGucaucggguuuuUCGCGCCCCg -3'
miRNA:   3'- -GUAUau-UCGC---------GCGCUGU------------AGCGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 103907 0.66 0.953514
Target:  5'- ----cGGGCGcCGCGGCcgCgggcgGCGCCgCCg -3'
miRNA:   3'- guauaUUCGC-GCGCUGuaG-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 88710 0.66 0.953514
Target:  5'- ------uGCGCGCGcAgAUUGgGCCCUu -3'
miRNA:   3'- guauauuCGCGCGC-UgUAGCgCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 32663 0.66 0.953514
Target:  5'- gGUGgacGGCGCcgGCGGCG-CGgGCCCg -3'
miRNA:   3'- gUAUau-UCGCG--CGCUGUaGCgCGGGg -5'
6665 5' -53.9 NC_001847.1 + 103200 0.66 0.953514
Target:  5'- ------cGCGCGCcgGAC--CGCGCUCCg -3'
miRNA:   3'- guauauuCGCGCG--CUGuaGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.